PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g006570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 523aa    MW: 58520.3 Da    PI: 5.0171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g006570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1744.5e-5491351127
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+++d++k+ePwdLp+   +k+++ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++
  Csa10g006570.1   9 LPLGFRFRPTDEELVNHYLRLKINGRHSDV-RVIPDIDVCKWEPWDLPAlsVIKTDDPEWFFFCPRDRKYPNGHRSNRATDSGYWKATGKDRSIK 102
                     699************************999.99***************4447888889************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyr 127
                     s k++l+g+kktLvfy+grapkge+t+W+mheyr
  Csa10g006570.1 103 S-KKTLIGMKKTLVFYRGRAPKGERTNWIMHEYR 135
                     *.999****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-635159IPR003441NAC domain
PROSITE profilePS5100557.6769159IPR003441NAC domain
PfamPF023651.1E-2810135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MGVVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSDVRV IPDIDVCKWE PWDLPALSVI  60
KTDDPEWFFF CPRDRKYPNG HRSNRATDSG YWKATGKDRS IKSKKTLIGM KKTLVFYRGR  120
APKGERTNWI MHEYRPTLKD LDGTGPGQSP FVLCRLFHKP DDRVNGVKSD EPAPSSCKYS  180
PDDTSSDLVQ ETPSSDTAVE KPSDYSGGCG YAQSNMADGS MTEVREENLW LSCDLEDQRA  240
LPPRMDSTYA GGFGDDEIGF QFQDGTSEPD VSLTELLEEV FNNPDDFSCE ESISRENPNG  300
IFSSDKMLQS AAPEDVFFND FMAYTDTDAE MVQLQYGLDH GASGWPKDAV SAYPATTNSY  360
YGDILQPDQM TNHNTEKNVT EGRGIKIRGR QPQNRSSTGL INQGIAPRRI RLQVHSSSVP  420
PDDKNQIEVK QREEVNEGLT DIPEDKEVAA KDSEKSDSLV KPQIKLRTRG TIGQVKAGKV  480
ADDEVQVERR KRRREGKQWK LVATVIVAVM VGVGVGMWLL GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-44415912165NO APICAL MERISTEM PROTEIN
1ut4_B2e-44415912165NO APICAL MERISTEM PROTEIN
1ut7_A2e-44415912165NO APICAL MERISTEM PROTEIN
1ut7_B2e-44415912165NO APICAL MERISTEM PROTEIN
3swm_A2e-44415915168NAC domain-containing protein 19
3swm_B2e-44415915168NAC domain-containing protein 19
3swm_C2e-44415915168NAC domain-containing protein 19
3swm_D2e-44415915168NAC domain-containing protein 19
3swp_A2e-44415915168NAC domain-containing protein 19
3swp_B2e-44415915168NAC domain-containing protein 19
3swp_C2e-44415915168NAC domain-containing protein 19
3swp_D2e-44415915168NAC domain-containing protein 19
4dul_A2e-44415912165NAC domain-containing protein 19
4dul_B2e-44415912165NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489493RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g006570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0564436e-95AY056443.1 Arabidopsis thaliana AT4g35580/F8D20_90 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432258.10.0PREDICTED: protein NTM1-like 9
SwissprotF4JN350.0NTL9_ARATH; Protein NTM1-like 9
TrEMBLR0H2V40.0R0H2V4_9BRAS; Uncharacterized protein
STRINGXP_010432259.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.30.0NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]