PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g006560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 343aa    MW: 39428 Da    PI: 8.9888
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g006560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.77.5e-26212260452
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      +sl+dlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl
  Csa10g006560.1 212 GLSLKDLSKYFGLTIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 260
                     589********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.814195280IPR003035RWP-RK domain
PfamPF020421.9E-21213260IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAHSVTSLAI FQSLIRKEAV RSLHVYGSVE IEREFLFESQ SPYVEKEAKP LFLLEGSRRP  60
EISEGSVYGT WRCIFLFRFN HPLPRFPTLL CPSGNPKLED IPNLANELKF ISESIPKTPS  120
KVSDEEQCSS VGYCKSDQPK RLKFESEEDS VRDCEVDQPK PRRIVLKQDL NCLPDSETES  180
EESEYEKTEH SESDENVKML MGKRTPSKIV AGLSLKDLSK YFGLTIVEAS RSLNVGLTVL  240
KKKCREFGIP RWPHRKIKSL DSLIHDLQRE AEREQEYSEA AAMAVAKKQK KLETEKRNIV  300
ERPFMEIQKE TKRFRQINFK KRHRASRAKK NQESLVSNSS ST*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g006560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0311351e-73AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBankAL1615871e-73AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026871e-73CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432257.10.0PREDICTED: protein RKD5-like
SwissprotO817911e-169RKD5_ARATH; Protein RKD5
TrEMBLR0GJ890.0R0GJ89_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010432257.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120492429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-150RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]