PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g006560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 343aa MW: 39428 Da PI: 8.9888 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.7 | 7.5e-26 | 212 | 260 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sl+dlskyF l+i +A+++L+v+lTvLK++CR++GI+RWPhRkiksl Csa10g006560.1 212 GLSLKDLSKYFGLTIVEASRSLNVGLTVLKKKCREFGIPRWPHRKIKSL 260 589********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.814 | 195 | 280 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-21 | 213 | 260 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MAHSVTSLAI FQSLIRKEAV RSLHVYGSVE IEREFLFESQ SPYVEKEAKP LFLLEGSRRP 60 EISEGSVYGT WRCIFLFRFN HPLPRFPTLL CPSGNPKLED IPNLANELKF ISESIPKTPS 120 KVSDEEQCSS VGYCKSDQPK RLKFESEEDS VRDCEVDQPK PRRIVLKQDL NCLPDSETES 180 EESEYEKTEH SESDENVKML MGKRTPSKIV AGLSLKDLSK YFGLTIVEAS RSLNVGLTVL 240 KKKCREFGIP RWPHRKIKSL DSLIHDLQRE AEREQEYSEA AAMAVAKKQK KLETEKRNIV 300 ERPFMEIQKE TKRFRQINFK KRHRASRAKK NQESLVSNSS ST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g006560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL031135 | 1e-73 | AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project). | |||
GenBank | AL161587 | 1e-73 | AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83. | |||
GenBank | CP002687 | 1e-73 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432257.1 | 0.0 | PREDICTED: protein RKD5-like | ||||
Swissprot | O81791 | 1e-169 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | R0GJ89 | 0.0 | R0GJ89_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010432257.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12049 | 24 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 1e-150 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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