PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g004910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 250aa    MW: 27944.3 Da    PI: 6.2997
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g004910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.31.1e-18168202135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Csa10g004910.1 168 CSHCGVEKTPQWRMGPLGAKTLCNACGVRFKSGRL 202
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.7E-851248IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.71E-13162224No hitNo description
SMARTSM004011.6E-13162216IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53162198IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.5E-14166200IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-16168202IPR000679Zinc finger, GATA-type
CDDcd002026.27E-14168224No hitNo description
PROSITE patternPS003440168193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MECVETFLGD FSVDDLLDLS NADTAFIREE SSSSQKEEED EQEQERDKGK GFSDQSTRVS  60
PLEGLLSFPS DDVPVGDLED LEWLSNFVED SFSESYLSGD FPVSVEVERQ CVPVKPRSKR  120
RRPNGRVWSL ESPSSLLPTA VAGKKKRGRQ TEEASSVDGV KQQPRRCCSH CGVEKTPQWR  180
MGPLGAKTLC NACGVRFKSG RLLPEYRPAC SPTFSTEIHS NSHRKVLELR LLKTADPGRV  240
TRSQKRRVF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g004910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432188.10.0PREDICTED: GATA transcription factor 7-like
SwissprotO655151e-131GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A178UWZ01e-129A0A178UWZ0_ARATH; GATA transcription factor
TrEMBLR0GYE71e-129R0GYE7_9BRAS; GATA transcription factor
STRINGXP_010432188.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-115GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]