PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g004680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 251aa    MW: 28807.9 Da    PI: 9.5924
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g004680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.53.1e-221562249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    +  n+sn qvtfskRr g++KKA+EL++LC+ae+++i+fs+ gk++ +
  Csa10g004680.1 15 KMRNESNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGGKVFSF 62
                    5689*****************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-34665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.782666IPR002100Transcription factor, MADS-box
CDDcd002656.03E-38783No hitNo description
SuperFamilySSF554552.22E-27794IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-19828IPR002100Transcription factor, MADS-box
PfamPF003191.1E-231662IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVRSNKGRQK IQMKKMRNES NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGGKVF  60
SFGHPGVREL IYRFLNFNHN SLIPHQPNNN LQLVDSRPDR NIQYLNEMLT HVLAKQEKAK  120
HNRMSLNMVK QSREQRGICW YEKDVKEFDL TETDDLIGAL QDVRKKLVSD MSHYPQLNVS  180
HQNYMGETAV FGGGGNVDVG GIDLFDQRMN TFNYNPIMGF PNQTPLFGYN NDGVIVPSYN  240
MNYMSSYNFN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A9e-18796186Myocyte-specific enhancer factor 2A
3kov_B9e-18796186Myocyte-specific enhancer factor 2A
3kov_I9e-18796186Myocyte-specific enhancer factor 2A
3kov_J9e-18796186Myocyte-specific enhancer factor 2A
3p57_A9e-18796186Myocyte-specific enhancer factor 2A
3p57_B9e-18796186Myocyte-specific enhancer factor 2A
3p57_C9e-18796186Myocyte-specific enhancer factor 2A
3p57_D9e-18796186Myocyte-specific enhancer factor 2A
3p57_I9e-18796186Myocyte-specific enhancer factor 2A
3p57_J9e-18796186Myocyte-specific enhancer factor 2A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g004680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432164.10.0PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A178UZM51e-119A0A178UZM5_ARATH; Uncharacterized protein
TrEMBLO232221e-119O23222_ARATH; MADS-box protein
STRINGXP_010432164.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142941022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-116M-type_MADS family protein