PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g004660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 26192 Da PI: 9.3588 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.9 | 8.3e-21 | 15 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + n+ n qvtfskRr g++KKA+EL++LC+ae+++i+fs+ k++ + Csa10g004660.1 15 KMRNEKNLQVTFSKRRFGLFKKASELCTLCGAEILMIVFSPGRKVFSF 62 56799************************************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.955 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-31 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.86E-36 | 7 | 83 | No hit | No description |
SuperFamily | SSF55455 | 6.67E-27 | 7 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-23 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-18 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MVKSNKGRQK IEMKKMRNEK NLQVTFSKRR FGLFKKASEL CTLCGAEILM IVFSPGRKVF 60 SFGHPGVREL IYRFTNFNHN SLIPHQPNNN NSLIPHQPNN NLQLVESRPD INVQYLNEML 120 THVLAKQEKA EHNRMTLDMV KQSRERRGIC WYEKDVKELD LTETDDLISA LQNVKKTLVS 180 DMSHYPQLNV SHHNYMGENT VFGGDRNVDV GGIDLFDQRM EYIQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-18 | 7 | 94 | 1 | 84 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g004660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432164.1 | 1e-125 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 8e-55 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A178UZM5 | 1e-87 | A0A178UZM5_ARATH; Uncharacterized protein | ||||
TrEMBL | O23222 | 1e-87 | O23222_ARATH; MADS-box protein | ||||
STRING | XP_010432164.1 | 1e-125 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14294 | 10 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 2e-92 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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