PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa10g004630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 214aa MW: 23157.1 Da PI: 7.0828 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.9 | 1.9e-20 | 78 | 112 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ Csa10g004630.1 78 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 112 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.903 | 72 | 108 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.0E-17 | 72 | 124 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.42E-13 | 75 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.7E-17 | 76 | 112 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.80E-14 | 77 | 109 | No hit | No description |
Pfam | PF00320 | 4.5E-18 | 78 | 112 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 78 | 103 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MGFSMFFSSE NDVAAHHSSP YASVDCTLSL GTPSTRLCND DDGCRFSSHT SDALGWDFLN 60 GAKKGGGGGG NNLLSRRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASTVGNS 120 TTGGRSTAAG VPTSDHQAGA NHYNFSNRDQ YASSSPWVHH HQHNTPYNYS PANNEYTFVG 180 DVRDVDHDAT SDPFLSWRLN VADRTSLVHD FTM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Regulates both flower and shoot apical meristem (SAM) development, especially for establishing organ boundaries in shoots and flowers, probably by controlling the number and position of WUS-expressing cells (PubMed:23335616, PubMed:25077795). {ECO:0000250, ECO:0000269|PubMed:23335616, ECO:0000269|PubMed:25077795}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa10g004630.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by HAN. {ECO:0000269|PubMed:23335616}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT029506 | 0.0 | BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432159.1 | 1e-158 | PREDICTED: GATA transcription factor 19 isoform X1 | ||||
Refseq | XP_019086379.1 | 1e-158 | PREDICTED: GATA transcription factor 19 isoform X2 | ||||
Swissprot | Q6QPM2 | 1e-104 | GAT19_ARATH; GATA transcription factor 19 | ||||
TrEMBL | A0A3P6B1R1 | 1e-116 | A0A3P6B1R1_BRAOL; Uncharacterized protein | ||||
STRING | XP_010432159.1 | 1e-157 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6159 | 17 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-101 | GATA transcription factor 19 |
Publications ? help Back to Top | |||
---|---|---|---|
|