PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g004490.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25120 Da PI: 4.9644

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g004490.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.4	1.4e-19	57	110	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Csa10g004490.1 57 KRKLTDEQVNMLEISFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKN 110 4589************************************************95 PP
2	HD-ZIP_I/II	123.8	8.2e-40	56	146	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+l++eqv++LE sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ +++rLe+ev +L+e+l Csa10g004490.1 56 RKRKLTDEQVNMLEISFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLY 146 8***************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.1E-19	54	115	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.406	56	111	IPR001356	Homeobox domain
CDD	cd00086	2.92E-16	56	112	No hit	No description
Pfam	PF00046	7.2E-17	57	110	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	57	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-20	58	118	IPR009057	Homeodomain-like
PRINTS	PR00031	9.3E-6	82	91	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.3E-6	91	107	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MNHTVDDQNM AFISQLYPDV YTQLVPQPGD VKPPKRRRKK SKGALASGDG SNCLFRKRKL 60 TDEQVNMLEI SFGDEHKLES ERKDRLAAEL GLDPRQVAVW FQNRRARWKN KRLEEEYNKL 120 KNSHDNVVVD KCRLESEVIQ LKEQLYDAER EIQRLAERAE GGSSHSPISS SVSVEANETP 180 FFGDYKVGDE EDDYDNLFYP VPENSYIDGA EWMSLYI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	37	58	RKKSKGALASGDGSNCLFRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g004490.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161589	1e-123	AL161589.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85.
GenBank	AL161590	1e-123	AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86.
GenBank	CP002687	1e-123	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBank	Z99708	1e-123	Z99708.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010432141.1	1e-162	PREDICTED: homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	1e-138	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	D7MBE6	1e-141	D7MBE6_ARALL; Homeobox-leucine zipper protein ATHB-40
STRING	XP_010432141.1	1e-161	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2208	26	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-130	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]