PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g004310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HB-other | ||||||||
Protein Properties | Length: 227aa MW: 24532.7 Da PI: 4.423 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 8 | 40 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 ryps +++ LA+++gL+ +qV++WF N R + Csa10g004310.1 8 LRYPSDADKHLLARQTGLSRNQVSNWFINARVR 40 59*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.515 | 1 | 44 | IPR001356 | Homeobox domain |
SMART | SM00389 | 0.0057 | 1 | 48 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-12 | 8 | 51 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.88E-11 | 9 | 45 | No hit | No description |
Pfam | PF05920 | 3.8E-13 | 10 | 40 | IPR008422 | Homeobox KN domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-18 | 10 | 50 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSFSGLFLRY PSDADKHLLA RQTGLSRNQV SNWFINARVR LWKPMVEEMY QQESKERERE 60 EELEVNEEDQ ETKNSNNDKS TKSNNNESNF TASRTTSQTP IITAPDVSDA DADAAVAVAT 120 GHRLRSDINA YENDPSSLLL PSSYSNAAAS SADLGSRYGG SAAFSAVATC QQGVGGFDDD 180 ADMGGVNVIR FGTNPTGDVS LTLGLRHAGN MPDKDPSFCV RDFGGF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g004310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF173816 | 0.0 | AF173816.1 Arabidopsis thaliana bel1-like homeodomain 2 (BLH2) mRNA, complete cds. | |||
GenBank | AY050459 | 0.0 | AY050459.1 Arabidopsis thaliana AT4g36870/C7A10_490 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010432123.1 | 1e-168 | PREDICTED: BEL1-like homeodomain protein 2 | ||||
Swissprot | Q9SW80 | 9e-92 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A1J3JVU3 | 1e-104 | A0A1J3JVU3_NOCCA; BEL1-like homeodomain protein 2 (Fragment) | ||||
TrEMBL | R0GH26 | 1e-103 | R0GH26_9BRAS; Uncharacterized protein | ||||
TrEMBL | R0GY96 | 1e-104 | R0GY96_9BRAS; Uncharacterized protein | ||||
STRING | XP_010432123.1 | 1e-168 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 3e-70 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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