PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g003910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 193aa    MW: 21452.7 Da    PI: 9.2839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g003910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183180255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+e Aa+a++ a  +l+g
  Csa10g003910.1 31 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPEAAARAYDTAVYYLRG 80
                    69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-373194IPR001471AP2/ERF domain
PROSITE profilePS5103222.7483188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-303289IPR001471AP2/ERF domain
PfamPF008476.0E-123280IPR001471AP2/ERF domain
CDDcd000181.04E-253290No hitNo description
PRINTSPR003675.3E-93243IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-213289IPR016177DNA-binding domain
PRINTSPR003675.3E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
METATEVATV VSTPVVTVAS AASATRKREK PYKGIRMRKW GKWVAEIREP NKRSRIWLGS  60
YSTPEAAARA YDTAVYYLRG PSARLNFPEL LAGVTVAGGG GNSGGDMSAA YIRRKAAEVG  120
AQVDALEAAG GNRHHHHQNQ HQRGNHDYGD NHSDYRINDD HMECTSKEEF KRCNNESWER  180
YFNHFSSPTQ QI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-153088463ATERF1
3gcc_A3e-153088463ATERF1
5wx9_A3e-1532881572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g003910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0031031e-160AF003103.1 Arabidopsis thaliana AP2 domain containing protein RAP2.10 mRNA, partial cds.
GenBankAJ0025981e-160AJ002598.1 Arabidopsis thaliana mRNA for TINY-like protein.
GenBankAL1615901e-160AL161590.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 86.
GenBankBT0203171e-160BT020317.1 Arabidopsis thaliana At4g36900 gene, complete cds.
GenBankBT0257571e-160BT025757.1 Arabidopsis thaliana At4g36900 mRNA, complete cds.
GenBankCP0026871e-160CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankZ997071e-160Z99707.1 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432078.11e-133PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotQ9SW631e-88RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLM4DMS61e-94M4DMS6_BRARP; Uncharacterized protein
STRINGXP_010432078.11e-132(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.16e-69related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]