PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10g003350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 554aa MW: 61101.3 Da PI: 7.8611 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.9 | 4.4e-12 | 285 | 341 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g rk + g ++ +e+Aa+a++ a++k++g Csa10g003350.1 285 SQYRGVTRHRWTGRYEAHLWDnSFKkEGhSRKGRQ-GGYDMEEKAARAYDLAALKYWG 341 78*******************43334555446666.77******************98 PP | |||||||
2 | AP2 | 51 | 3.5e-16 | 384 | 435 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g Csa10g003350.1 384 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDVAAIKFRG 435 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-9 | 285 | 341 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-14 | 285 | 351 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.00E-18 | 285 | 348 | No hit | No description |
SMART | SM00380 | 1.9E-20 | 286 | 355 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-12 | 286 | 349 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.99 | 286 | 349 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 287 | 298 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-18 | 384 | 444 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-11 | 384 | 435 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.94E-25 | 384 | 445 | No hit | No description |
SMART | SM00380 | 3.8E-34 | 385 | 449 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.966 | 385 | 443 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-18 | 385 | 443 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 425 | 445 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 554 aa Download sequence Send to blast |
MKSFCDNDEN NHSNTTNLLG FSLSSNMMKM GGRGGGEAIY SSTTSSAATS SSSVPPQLVV 60 GDNSNNYGVC YGSNSTGEIY SHMSVMPLRS DGSLCLMEAL NRSSHSSHHQ DSSPKMEDFF 120 GTHHHNNTSH KEAMDLSLDS LFYSTTHEPN TATNFQEFFS FPQTRNHHGG ETRNYENDPG 180 LTHGGSFNVG VYGEFQQSLS LSMSPGSQSS CITGSHHHHQ NQQNHQSQNQ NHHQISEALV 240 DTSVGFETTT MAVAKKKRGQ EVVVVVGQKP IVHRKSIDTF GQRTSQYRGV TRHRWTGRYE 300 AHLWDNSFKK EGHSRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHTNFSV ENYQKEIDDM 360 KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFGTQE 420 EAAEAYDVAA IKFRGTNAVT NFDITRYDVE RIMSSNTLLS GELARRNNNS VVVCNNDDQT 480 ALTAVVDGGS KASSPERVLS FPAIFALPQV GPKMFGANVV GNMSPWSSNP NAELKTVALS 540 LPQMPVFAAW ADS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10g003350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU40256 | 0.0 | U40256.1 Arabidopsis thaliana ovule development protein (AINTEGUMENTA) mRNA, complete cds. | |||
GenBank | ATU41339 | 0.0 | U41339.1 Arabidopsis thaliana ANT (AINTEGUMENTA) mRNA, complete cds. | |||
GenBank | AY080706 | 0.0 | AY080706.1 Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds. | |||
GenBank | AY117207 | 0.0 | AY117207.1 Arabidopsis thaliana putative ovule development protein aintegumenta (At4g37750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023634644.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 0.0 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | R0GHP4 | 0.0 | R0GHP4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006283436.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 0.0 | AP2 family protein |