PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g003320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 305aa    MW: 34760.8 Da    PI: 6.0764
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g003320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.88.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+ +++++G+g +W + ++++g +R++k+c++rw++yl
   Csa10g003320.1 14 KGPWSPEEDAILKSYIEKHGTGnNWISLPQRIGIKRCGKSCRLRWLNYL 62
                     79*******************************55************97 PP
2Myb_DNA-binding35.81.9e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   Csa10g003320.1  69 GGFTDEEDYIICSLYITIGSR-WTIIASQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.348966IPR017930Myb domain
SuperFamilySSF466891.13E-2612109IPR009057Homeodomain-like
SMARTSM007173.5E-131364IPR001005SANT/Myb domain
PfamPF002494.2E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241569IPR009057Homeodomain-like
CDDcd001678.16E-101662No hitNo description
PROSITE profilePS5129415.10967117IPR017930Myb domain
SMARTSM007171.7E-1067115IPR001005SANT/Myb domain
PfamPF002495.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2270117IPR009057Homeodomain-like
CDDcd001675.97E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRAPCCDKT AVKKGPWSPE EDAILKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN  60
YLRPNLKHGG FTDEEDYIIC SLYITIGSRW TIIASQLPGR TDNDIKNYWN TRLKKKLLSK  120
QEKAFHQQLN VKFERGTTSS SLSSQNQIPI LHDENTESNQ TLYDQVVDPS ITSFAIEEQS  180
MIKNPILESF SWEPNKVLFD IDHDAAASSY HHHHSSPSLN SMSSSSSTCF NSYLQMSNYS  240
VNQSDQHDMF FMTGFENLQD ELFNEIANKN NTQAIGLHGT EMLNNNCLDH DISSFVDYPL  300
YDIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions as regulator of genes affecting cell wall organization and remodeling. Activates genes related to the primary cell wall and represses genes related to the secondary cell wall and expansins. Required for the regulation of longitudinal cell growth in stems, leaves, petioles, roots, flowers and siliques. {ECO:0000269|PubMed:24563287}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g003320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196140.0AY519614.1 Arabidopsis thaliana MYB transcription factor (At4g37780) mRNA, complete cds.
GenBankDQ4469050.0DQ446905.1 Arabidopsis thaliana clone pENTR221-At4g37780 myb family transcription factor (At4g37780) mRNA, complete cds.
GenBankDQ6532530.0DQ653253.1 Arabidopsis thaliana clone 0000017306_0000012115 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432031.10.0PREDICTED: transcription factor MYB36-like
SwissprotF4JSU01e-174MYB87_ARATH; Transcription factor MYB87
TrEMBLR0GN681e-180R0GN68_9BRAS; Uncharacterized protein
STRINGXP_010432031.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.11e-169myb domain protein 87
Publications ? help Back to Top
  1. Fujiwara S, et al.
    Chimeric repressor analysis identifies MYB87 as a possible regulator of morphogenesis via cell wall organization and remodeling in Arabidopsis.
    Biotechnol. Lett., 2014. 36(5): p. 1049-57
    [PMID:24563287]