PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g003120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 236aa    MW: 26052.3 Da    PI: 9.8755
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g003120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.13e-364197460
          zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                      lkcprCds ntkfCyynnyslsqPr++Ck+CrryWt+GGalrnvPvGg++r+++k
  Csa10g003120.1 41 PVLKCPRCDSVNTKFCYYNNYSLSQPRHYCKNCRRYWTRGGALRNVPVGGSTRNKNK 97
                    5789*************************************************8876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-283897IPR003851Zinc finger, Dof-type
PfamPF027016.3E-324297IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.3514397IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104581IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MMTSSHQSNT SSFKPRRIKT MTKSPRQIDN KERSSPATTK PVLKCPRCDS VNTKFCYYNN  60
YSLSQPRHYC KNCRRYWTRG GALRNVPVGG STRNKNKPCS LHVISSPPLF SNVTTSSTTT  120
MMMMSSGGFS GYMFPLDPNY NLASSSSIES LSSFNQDLHQ KLQQQRLIAS MIHQDSLPVN  180
EKPVMFQNGE LIPLSTDWGF DRSAMGGGAT SGSHGDNGDG EGNLGNWYHN ANAML*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Involved in the negative regulation of floral organ abscission by binding to the typical DOF 5'-AAAG-3' sequences in the promoter of ADPG2/PGAZAT, and by down-regulating its expression. ADPG2/PGAZAT is an abscission-related and cell wall hydrolyzing polygalacturonase. May act through the interaction with ZFP2, an abscission-related transcription factor. {ECO:0000269|PubMed:20466844}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g003120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2286131e-120AK228613.1 Arabidopsis thaliana mRNA for Dof zinc finger protein - like, complete cds, clone: RAFL15-43-I22.
GenBankAL0355381e-120AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBankAL1615921e-120AL161592.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88.
GenBankBT0057671e-120BT005767.1 Arabidopsis thaliana clone RAFL15-43-I22 (R20996) putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankBT0060921e-120BT006092.1 Arabidopsis thaliana clone U20996 putative Dof zinc finger protein (At4g38000) mRNA, complete cds.
GenBankCP0026871e-120CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010432006.11e-177PREDICTED: dof zinc finger protein DOF4.7-like
SwissprotQ84K521e-133DOF47_ARATH; Dof zinc finger protein DOF4.7
TrEMBLR0H5B01e-139R0H5B0_9BRAS; Uncharacterized protein
STRINGXP_010432006.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152861518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38000.11e-116DNA binding with one finger 4.7