PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa10g002940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 304aa    MW: 34489.8 Da    PI: 4.9659
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa10g002940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-1861114356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++  +q+++Le+ Fe ++++  e++++LA++lgL+ rqV vWFqNrRa++k
  Csa10g002940.1  61 KKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWK 114
                     45578899*********************************************9 PP
2HD-ZIP_I/II128.92.1e-4160152193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl  +qvk+LE++Fe e+kLeperK++la+eLglqprqvavWFqnrRAR+ktkqlEkdy  Lk++yd+l+++ ++L++++++L +e+++
  Csa10g002940.1  60 EKKRRLRVDQVKALEKNFELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGILKSQYDSLRHNFDSLRRDNDSLLQEISK 152
                     69*************************************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1850118IPR009057Homeodomain-like
PROSITE profilePS5007116.81156116IPR001356Homeobox domain
SMARTSM003891.5E-1659120IPR001356Homeobox domain
CDDcd000867.35E-1661117No hitNo description
PfamPF000461.5E-1561114IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-1964123IPR009057Homeodomain-like
PRINTSPR000317.0E-68796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000317.0E-696112IPR000047Helix-turn-helix motif
PfamPF021832.4E-16116155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MKRLSSSDSM CGLISTSTDE QSPRGYGSNY QSMLEGYEED ATLIEEYSGN NHNHHMGLSE  60
KKRRLRVDQV KALEKNFELE NKLEPERKTK LAQELGLQPR QVAVWFQNRR ARWKTKQLEK  120
DYGILKSQYD SLRHNFDSLR RDNDSLLQEI SKIKATINGE EDNNKATTES VKREEVVSLP  180
ESFHKTDSTP SSPPQFLEHS TGFNYRRSFT DLRDLLPNST VVVGDAGYSD SCDSSAVLNE  240
ETSSDNGRLT PPSTVAGGSF LQFVKTEQRE DHDDFLSGEE ACGFFSDEQP PSLHWYSASD  300
HWT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108116RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa10g002940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431992.10.0PREDICTED: homeobox-leucine zipper protein ATHB-16
SwissprotQ940J10.0ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLR0F6G20.0R0F6G2_9BRAS; Uncharacterized protein
STRINGXP_010431992.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.10.0homeobox protein 16
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]