PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa10227s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 60aa MW: 6877.04 Da PI: 4.3628 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.4 | 0.00029 | 4 | 32 | 23 | 55 |
HHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 23 LrellPkaskapskKlsKaeiLekAveYIksLq 55 L++l+P + +k Ka +L + ++Y++sLq Csa10227s010.1 4 LQDLVPGC----DKITGKAGMLDEIINYVQSLQ 32 89999999....888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.604 | 1 | 31 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-10 | 2 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-10 | 2 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
MKFLQDLVPG CDKITGKAGM LDEIINYVQS LQRQIEFLSM KLAVVNPRPD FDMDDIFAKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa10227s010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488596 | 2e-74 | AF488596.1 Arabidopsis thaliana clone bHLH063 putative bHLH transcription factor mRNA, complete cds. | |||
GenBank | AK117846 | 2e-74 | AK117846.1 Arabidopsis thaliana At4g34530 mRNA for putative bHLH transcription factor (bHLH063), complete cds, clone: RAFL18-04-K08. | |||
GenBank | AY120741 | 2e-74 | AY120741.1 Arabidopsis thaliana unknown protein (At4g34530:At4g34540) mRNA, complete cds. | |||
GenBank | BT005313 | 2e-74 | BT005313.1 Arabidopsis thaliana At4g34530 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010437601.1 | 9e-36 | PREDICTED: transcription factor bHLH63-like | ||||
Swissprot | Q8GY61 | 3e-36 | BH063_ARATH; Transcription factor bHLH63 | ||||
TrEMBL | A0A178V495 | 7e-34 | A0A178V495_ARATH; CIB1 | ||||
STRING | Bostr.7867s1312.1.p | 4e-35 | (Boechera stricta) | ||||
STRING | XP_010437601.1 | 3e-35 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16325 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 1e-38 | cryptochrome-interacting basic-helix-loop-helix 1 |