PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g099480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 342aa    MW: 36544.1 Da    PI: 7.6266
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g099480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.8e-393192263
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                    +++al+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+PvGgg rknk+sss
  Csa09g099480.1 31 RDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTEGGSLRNIPVGGGIRKNKRSSS 92
                    6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-302383IPR003851Zinc finger, Dof-type
PfamPF027012.2E-333289IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7143589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNEIVTNTCL KQPNPPPPAA TPVERKARPE RDQALNCPRC NSLNTKFCYY NNYSLTQPRY  60
FCKDCRRYWT EGGSLRNIPV GGGIRKNKRS SSNSNSSSSS SPSSSSSSKK PLFSNTPSPL  120
PQLNPKIGEA AAAATTAKVQ DLAFPQGFGN AHEVKDLNLA FSQGFGIGGH HHHSIPEFLQ  180
VVPSSMKNNN NPLVSTSSAL ELLGISNSSA SSNSRPAFMS FPNVHDYTAS GFGMSYPQFQ  240
DFMRPALGFS LDGGYGGDPL HQEEGSSVTT NNGRPSLQFE SLKLPVSSPS TNSGGNVKEN  300
DQHSDHEHEK DEGEADHSVG FWNGMLSAGT TSAASGGGSW H*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g099480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430605.10.0PREDICTED: dof zinc finger protein DOF1.8 isoform X1
SwissprotQ84JQ81e-155DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLA0A178W2N81e-154A0A178W2N8_ARATH; Uncharacterized protein
TrEMBLA0A178W4E61e-154A0A178W4E6_ARATH; Uncharacterized protein
STRINGXP_010430605.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-138Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]