PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g098470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 124aa    MW: 14000.9 Da    PI: 8.1999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g098470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-146101396
                     EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     k lt  dv++ grl lpk+ + +        ++++++++ + d + +s++v++    + + y l++GWk+  + + Lk+gDf+ ++ dg ++f l
  Csa09g098470.1   6 KYLTDTDVSNYGRLLLPKDSCINLlnkmkTTIPQNGIQVEVLDNNAKSYTVTF--HEHNNIYHLRNGWKDIINKKSLKSGDFIELYWDG-TQFIL 97 
                     678899***************8889988855667999****************..99999**************************655.88877 PP

                     EEEE CS
              B3  93 vvkv 96 
                      v+ 
  Csa09g098470.1  98 IVQS 101
                     7665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.4184102IPR003340B3 DNA binding domain
SMARTSM010193.0E-84105IPR003340B3 DNA binding domain
CDDcd100177.32E-154100No hitNo description
SuperFamilySSF1019365.76E-18599IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-155107IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-116102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MIKISKYLTD TDVSNYGRLL LPKDSCINLL NKMKTTIPQN GIQVEVLDNN AKSYTVTFHE  60
HNNIYHLRNG WKDIINKKSL KSGDFIELYW DGTQFILIVQ SCAPEQTYEK GESSSSAIGA  120
EKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g098470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010513332.13e-25(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.15e-21B3 family protein