PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g097700.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 293aa    MW: 33014.2 Da    PI: 6.5649
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g097700.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072422742254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+++++++L +++gL+ +q+ +WF N+R +
  Csa09g097700.1 242 WPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 274
                     58*****************************87 PP
2ELK22.72.3e-08195216122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK +L++++++++ ++++E++
  Csa09g097700.1 195 ELKLELKQGFKSRIEDVREEIM 216
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-192771IPR005540KNOX1
PfamPF037908.7E-172970IPR005540KNOX1
SMARTSM012565.1E-2581136IPR005541KNOX2
PfamPF037917.7E-1985135IPR005541KNOX2
PROSITE profilePS512139.202195215IPR005539ELK domain
PROSITE profilePS5007111.823215278IPR001356Homeobox domain
SuperFamilySSF466892.48E-16217281IPR009057Homeodomain-like
SMARTSM003896.3E-11217282IPR001356Homeobox domain
CDDcd000863.69E-12218279No hitNo description
Gene3DG3DSA:1.10.10.605.0E-25222280IPR009057Homeodomain-like
PfamPF059203.2E-18235274IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MQEAALGMIG ATVGGDGDAA AMAEQNRQMK GEIATHPMYE QLLAAHVACL RVATPIDQLP  60
IIEAQLSQSH HLLRSYASTA VGYSHHDRHE LDNFLAQYVM VLCSFKEQLQ QHVRVHAVEA  120
VMACREIENN LHTLTGATLG EGSGATMSED EDDLQMDFSS DNSGVDFSGG HDMTGFGPLL  180
PTESERSLME RVRQELKLEL KQGFKSRIED VREEIMRKRR AGKLPGDTTT VLKNWWQQHC  240
KWPYPTEDDK AKLVEETGLQ LKQINNWFIN QRKRNWHNNS HSLTSLKSKR KH*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g097700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3084510.0AF308451.1 Arabidopsis thaliana homeodomain transcription factor KNAT7 (KNAT7) mRNA, complete cds.
GenBankBT0260590.0BT026059.1 Arabidopsis thaliana At1g62990 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430375.10.0PREDICTED: homeobox protein knotted-1-like 7
SwissprotQ9FPQ80.0KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLR0GI400.0R0GI40_9BRAS; Uncharacterized protein
STRINGXP_010430375.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.10.0KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]