PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g096910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 572aa MW: 62483 Da PI: 5.88

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g096910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.6e-31	328	386	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Csa09g096910.1 328 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGNHNHP 386 7*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.3E-34	312	388	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-28	320	388	IPR003657	WRKY domain
PROSITE profile	PS50811	29.792	322	388	IPR003657	WRKY domain
SMART	SM00774	2.4E-37	327	387	IPR003657	WRKY domain
Pfam	PF03106	4.9E-27	329	386	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MDRGWSGLTL DSSSLDLLNP NRIITHNNNH RRFSNPLTTM SRIGDDDGDN DQKTRVSTIG 60 SEFRFPVSLS GIRDREDDDF SSGAAGDNDR EVPGEVDFFS DKKSRVCRED DAGFRVKKEE 120 QDDRTDVNTG LNLRTTGNTK SDESMIDDGE SSEMEDKRAK IELVKLQDEL KRMTMDNQKL 180 RELLAQVSNS YTSLQMHLVS LMQQQQQQQQ QNNNKVIEAA EKPEETIVPR QFIDLGPTRA 240 VGEAEEASNS SSEEKTRSGG SSPAERRSNE VRDRKRLGRE ESPETESNKI QKVNNSTNPT 300 TFDQSAAEAT MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMATGCP 360 VRKQVQRCAE DRSILITTYE GNHNHPLPPA AVAMASTTTA AANMLLSGSM SSHDGMMNPT 420 NLLARAVLPC STSMATISAS APFPTVTLDL THSPPPTNGS NPSSSAAATT NNDHNLLMQR 480 PQQQQQQMAN LPPGMLPHVI GQALYNQSKF SGLQFSNGSP SAAAYSQSNA VADTITALTA 540 DPNFTAALAA VISSMINGSN QHDGEGNNKN Q*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MDRGWSGLTL DSSSLDLLNP NRIITHNNNH RRFSNPLTTM SRIGDDDGDN DQKTRVSTIG  60
SEFRFPVSLS GIRDREDDDF SSGAAGDNDR EVPGEVDFFS DKKSRVCRED DAGFRVKKEE  120
QDDRTDVNTG LNLRTTGNTK SDESMIDDGE SSEMEDKRAK IELVKLQDEL KRMTMDNQKL  180
RELLAQVSNS YTSLQMHLVS LMQQQQQQQQ QNNNKVIEAA EKPEETIVPR QFIDLGPTRA  240
VGEAEEASNS SSEEKTRSGG SSPAERRSNE VRDRKRLGRE ESPETESNKI QKVNNSTNPT  300
TFDQSAAEAT MRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPRAY YRCTMATGCP  360
VRKQVQRCAE DRSILITTYE GNHNHPLPPA AVAMASTTTA AANMLLSGSM SSHDGMMNPT  420
NLLARAVLPC STSMATISAS APFPTVTLDL THSPPPTNGS NPSSSAAATT NNDHNLLMQR  480
PQQQQQQMAN LPPGMLPHVI GQALYNQSKF SGLQFSNGSP SAAAYSQSNA VADTITALTA  540
DPNFTAALAA VISSMINGSN QHDGEGNNKN Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-22	314	390	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g096910.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF331712	0.0	AF331712.1 Arabidopsis thaliana transcription factor WRKY6 (WRKY6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430271.1	0.0	PREDICTED: WRKY transcription factor 6-like
Swissprot	Q9C519	0.0	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	R0IA37	0.0	R0IA37_9BRAS; Uncharacterized protein
STRING	XP_010430271.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1057	28	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	0.0	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]