PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g093390.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 398aa    MW: 44471 Da    PI: 4.6195
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g093390.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07126151126
                      TSSS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWkt 26 
                      rg+W++eEd++l+  ++++G ++Wk+
   Csa09g093390.1 126 RGPWSPEEDLKLISSIQKFGHKNWKS 151
                      89**********************96 PP
2Myb_DNA-binding54.92e-17155200148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
   Csa09g093390.1 155 RGNFTAEEEETIIKLHQNYGNK-WSKIASQLP-GRTDNEIKNVWRTHL 200
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-10118150IPR009057Homeodomain-like
PROSITE profilePS500906.737121149IPR017877Myb-like domain
SuperFamilySSF466897.34E-19124196IPR009057Homeodomain-like
PfamPF002495.6E-6126151IPR001005SANT/Myb domain
PROSITE profilePS5129425.008150204IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-24151205IPR009057Homeodomain-like
SMARTSM007171.8E-15154202IPR001005SANT/Myb domain
PfamPF002495.6E-16155200IPR001005SANT/Myb domain
CDDcd001678.64E-11157200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MTSLCLCLCL LGFENEGHLA VILDIPLGVF RKLISDLRAK EYNGEDWQSW CNRTGSGQLV  60
RQAATAACIL NEVIFGVTDQ ATDALSRLVR KSRKGNFALS GERERGKEGE RMEKGRAPCD  120
KTKVKRGPWS PEEDLKLISS IQKFGHKNWK SDLKRGNFTA EEEETIIKLH QNYGNKWSKI  180
ASQLPGRTDN EIKNVWRTHL KKRLVQSSGN DLTAHEPASS PCLSDSVSRG NEDKSRAEDS  240
LNITTNDESS SRNGLSTSVS AGGSFNHSNQ EDDPTIGLMF EYMEEDYSEF NDIIQEVDKP  300
DLVEIPFDTD TDIWSYLDAP NSFQQCAANE FSSASRVEEE SDEDEVKKWL KNLESELGLE  360
EDDSQQQRTQ ENKESSSSSS SSSSSSSLLK TCELMIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-141262044105C-Myb DNA-Binding Domain
1msf_C2e-141262044105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g093390.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026844e-92CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankYUP8H12R4e-92AC002986.1 Arabidopsis thaliana chromosome 1 YAC YUP8H12R sequence, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085719.11e-177PREDICTED: myb-related protein Zm1-like
SwissprotQ6R0A61e-117MYB63_ARATH; Transcription factor MYB63
TrEMBLR0GID11e-137R0GID1_9BRAS; Uncharacterized protein
STRINGXP_010417537.11e-158(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.11e-101myb domain protein 63
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Noda S, et al.
    The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63.
    Planta, 2015. 242(3): p. 589-600
    [PMID:26070439]
  3. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]