PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g092450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12895.1 Da    PI: 9.505
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g092450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.23.3e-161053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +ie    r   +skR++gilKKAeEL  LCd+++ +i++s+t k
  Csa09g092450.1 10 QIECPKERGSKYSKRKKGILKKAEELALLCDINIMMILISPTEK 53
                    56666778888******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.427161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-19279IPR002100Transcription factor, MADS-box
CDDcd002661.29E-16284No hitNo description
PRINTSPR004041.1E-11323IPR002100Transcription factor, MADS-box
PfamPF003194.2E-151156IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MGRKKLDLKQ IECPKERGSK YSKRKKGILK KAEELALLCD INIMMILISP TEKPTLFHTR  60
TRSLSQILKE FLSTSIQERE ERRAYTTKVL EKLVETNDAE DPIVIDYLSP D
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g092450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429654.23e-75PREDICTED: agamous-like MADS-box protein AGL65
TrEMBLR0HI126e-36R0HI12_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010417420.18e-59(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73301838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26320.11e-35AGAMOUS-like 33