PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g091840.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 366aa MW: 40709.5 Da PI: 6.2963

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g091840.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.8	4.5e-35	104	200	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 lf r+w+eeDe+++L+Gl+d++aktg +++ d+dafy+f+ +si k+sk+q++ Kir+LKk+f + +k+++g++p+f++++d+++f++s++iW Csa09g091840.1 104 LFIRIWNEEDELSVLKGLVDYRAKTGFQSKIDWDAFYRFLGGSIAEKYSKEQVLGKIRKLKKRFLVHLEKINQGSDPKFTRASDSEAFGFSMMIW 198 688******************************************************************************************** PP DUF573 97 gs 98 g+ Csa09g091840.1 199 GQ 200 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.4E-26	106	199	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
SDSSVKGVSR KLGISGGFDE CDLGLGFCLH APFLTRIMVS PKHLEFSSSG GAADSDDTFS 60 QQKSPRNPSS KRPAASDAAE EEATKKKKKK KKKKTTTTKL SSPLFIRIWN EEDELSVLKG 120 LVDYRAKTGF QSKIDWDAFY RFLGGSIAEK YSKEQVLGKI RKLKKRFLVH LEKINQGSDP 180 KFTRASDSEA FGFSMMIWGQ NEVGHDDGDD DDDDGIDKEM LKEQEEPLNE NGLVKVTDNN 240 GTARLEQQRG NGEEMLKEHE DVANTERLNE NGAAKVTENG TTAGKESHNN DDDELCAVRD 300 AFETVMSQGL SDYQRKLQLE KLMNIGAGKR RKLSDEWKAL CVEERKLNIK KLRFSAKLAE 360 AANDG*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

SDSSVKGVSR KLGISGGFDE CDLGLGFCLH APFLTRIMVS PKHLEFSSSG GAADSDDTFS  60
QQKSPRNPSS KRPAASDAAE EEATKKKKKK KKKKTTTTKL SSPLFIRIWN EEDELSVLKG  120
LVDYRAKTGF QSKIDWDAFY RFLGGSIAEK YSKEQVLGKI RKLKKRFLVH LEKINQGSDP  180
KFTRASDSEA FGFSMMIWGQ NEVGHDDGDD DDDDGIDKEM LKEQEEPLNE NGLVKVTDNN  240
GTARLEQQRG NGEEMLKEHE DVANTERLNE NGAAKVTENG TTAGKESHNN DDDELCAVRD  300
AFETVMSQGL SDYQRKLQLE KLMNIGAGKR RKLSDEWKAL CVEERKLNIK KLRFSAKLAE  360
AANDG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	93	KKKKKKKKKK
2	85	93	KKKKKKKKK
3	87	93	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. May play redundant roles with GEBP and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269\|PubMed:21875893, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g091840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429565.1	0.0	PREDICTED: GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q8VYD2	1e-141	STKLH_ARATH; GLABROUS1 enhancer-binding protein-like 1
TrEMBL	R0G0S3	1e-165	R0G0S3_9BRAS; Uncharacterized protein
STRING	XP_010429565.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25650.1	1e-131	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]