PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g090020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CO-like | ||||||||
Protein Properties | Length: 301aa MW: 32584.6 Da PI: 6.9667 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 25 | 3.9e-08 | 5 | 46 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ ++ ++lfC+ + +lC C ++H H++ Csa09g090020.2 5 RLCDSCKLTAATLFCRADAAFLCGACDGKIHTAnklasrHER 46 78*****999*********************55666767765 PP | |||||||
2 | zf-B_box | 25.9 | 2e-08 | 47 | 92 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ + lC C +H+ H++vp+ Csa09g090020.2 47 VWLCEVCEQAPAHVTCKADAAALCIACDRDIHSAnplsrrHERVPI 92 689*****************************66899999*99997 PP | |||||||
3 | CCT | 69.6 | 8e-24 | 234 | 277 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++ Csa09g090020.2 234 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 277 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.466 | 2 | 49 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 6.3E-14 | 2 | 49 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-6 | 5 | 46 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.16E-7 | 5 | 49 | No hit | No description |
PROSITE profile | PS50119 | 10.879 | 45 | 92 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-7 | 47 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.76E-9 | 48 | 92 | No hit | No description |
SMART | SM00336 | 2.1E-9 | 50 | 92 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.658 | 234 | 276 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.2E-17 | 234 | 276 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MASSRLCDSC KLTAATLFCR ADAAFLCGAC DGKIHTANKL ASRHERVWLC EVCEQAPAHV 60 TCKADAAALC IACDRDIHSA NPLSRRHERV PIVPFYDAVS GSAKSASSSV NFVDDDGGDA 120 DVSVEAASWL LPKEGGGVEI SNLFSDLEYP KMEVTSENSS GNDGVVPVQN KTMFLSEDYF 180 NFDLAPSKIS QQGFNFINQT DSSRSLDVAL VPENGGVTTT VTMTPVVQLS PAEREARVLR 240 YREKRKNRKF EKTIRYASRK AYAEMRPRIK GRFAKRTDSK GDDGGGDVGV YGGFGVVPSF 300 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g090020.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429472.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 3-like | ||||
Refseq | XP_010429473.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 3-like | ||||
Swissprot | Q9SK53 | 1e-171 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | A0A178VTY8 | 1e-168 | A0A178VTY8_ARATH; COL3 | ||||
STRING | XP_010429472.1 | 0.0 | (Camelina sativa) | ||||
STRING | XP_010429473.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24790.1 | 1e-150 | CONSTANS-like 3 |
Publications ? help Back to Top | |||
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