PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g090020.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 301aa    MW: 32584.6 Da    PI: 6.9667
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g090020.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box253.9e-08546439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r C+ ++   ++lfC+ +  +lC  C  ++H        H++
  Csa09g090020.2  5 RLCDSCKLTAATLFCRADAAFLCGACDGKIHTAnklasrHER 46
                    78*****999*********************55666767765 PP

2zf-B_box25.92e-084792342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     + C+ +e+ +++  C+ +   lC  C   +H+       H++vp+
  Csa09g090020.2 47 VWLCEVCEQAPAHVTCKADAAALCIACDRDIHSAnplsrrHERVPI 92
                    689*****************************66899999*99997 PP

3CCT69.68e-24234277144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  Csa09g090020.2 234 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 277
                     9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.466249IPR000315B-box-type zinc finger
SMARTSM003366.3E-14249IPR000315B-box-type zinc finger
PfamPF006432.3E-6546IPR000315B-box-type zinc finger
CDDcd000214.16E-7549No hitNo description
PROSITE profilePS5011910.8794592IPR000315B-box-type zinc finger
PfamPF006436.6E-74792IPR000315B-box-type zinc finger
CDDcd000211.76E-94892No hitNo description
SMARTSM003362.1E-95092IPR000315B-box-type zinc finger
PROSITE profilePS5101716.658234276IPR010402CCT domain
PfamPF062031.2E-17234276IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MASSRLCDSC KLTAATLFCR ADAAFLCGAC DGKIHTANKL ASRHERVWLC EVCEQAPAHV  60
TCKADAAALC IACDRDIHSA NPLSRRHERV PIVPFYDAVS GSAKSASSSV NFVDDDGGDA  120
DVSVEAASWL LPKEGGGVEI SNLFSDLEYP KMEVTSENSS GNDGVVPVQN KTMFLSEDYF  180
NFDLAPSKIS QQGFNFINQT DSSRSLDVAL VPENGGVTTT VTMTPVVQLS PAEREARVLR  240
YREKRKNRKF EKTIRYASRK AYAEMRPRIK GRFAKRTDSK GDDGGGDVGV YGGFGVVPSF  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g090020.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429472.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
RefseqXP_010429473.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK531e-171COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A178VTY81e-168A0A178VTY8_ARATH; COL3
STRINGXP_010429472.10.0(Camelina sativa)
STRINGXP_010429473.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.11e-150CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]