PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g087930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TALE | ||||||||
Protein Properties | Length: 642aa MW: 71078 Da PI: 6.9008 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 459 | 496 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yps +++ LA+++gL+ +qV++WF N R + Csa09g087930.1 459 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 496 665569******************************88 PP | |||||||
2 | BELL | 123.7 | 7.6e-40 | 317 | 388 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+ Csa09g087930.1 317 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 388 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.1E-84 | 244 | 386 | IPR006563 | POX domain |
Pfam | PF07526 | 1.5E-51 | 250 | 385 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.86 | 437 | 500 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-9 | 440 | 504 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.41E-13 | 440 | 501 | No hit | No description |
SuperFamily | SSF46689 | 1.28E-17 | 441 | 507 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 443 | 506 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.9E-18 | 457 | 496 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MGLATTTFHQ YQNSDSSMSQ DYHHHQGIFS FSNGFHRSSS TTHHEEEVDE SAVSGAQIPV 60 YETAGMLSEM FAFPGGGGGG SGGEILDQSS TKQLLEQQNR HNNNNNNSTL HMLLPNHHQG 120 FAFTDENTMH QQQQQHFTWP SSSDHHQNRD MIGTVHVEGR KGLSLSLSSS LAAAKAEEYR 180 SIYCAAVDGT SSSTNASAHH HQFNQFKNLV LDNSSSSHHH HHQHQVVGHF GSSSSSPMAA 240 SSSIGGIYTL RNSKYTKPAQ ELLEEFCSVG RGHFKKNKLS RNNSNPNTTG GGGGGVGGGS 300 SSSAGTANDN PPLSPADRIE HQRRKVKLLS MLEEVDRRYN HYCEQMQMVV NSFDQVMGYG 360 AAVPYTTLAQ KAMSRHFRCL KDAVAVQLKR SCELLGDKEA AGAASSGLTK GETPRLRLLE 420 QSLRQQRAFH HMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLNPYPSDA DKHLLARQTG 480 LSRNQVSNWF INARVRLWKP MVEEMYQQEA KEREEEAEEN ENQQQRRQQQ TNNNDTKPNN 540 NENNFTVITA QTPTTMTSTH HDSDSSFLLP SVAAASHGGS DAFTVTTCQQ DVSDFHVDDG 600 VNVIRFGTKQ PGDVSLTLGL RHSGNIPDKN TSFSVRDFGD F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 9e-16 | 446 | 503 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 9e-16 | 446 | 503 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 288 | 299 | TGGGGGGVGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g087930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF353092 | 0.0 | AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds. | |||
GenBank | AY058179 | 0.0 | AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. | |||
GenBank | AY142019 | 0.0 | AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010429329.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 isoform X3 | ||||
Refseq | XP_019085111.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 isoform X1 | ||||
Swissprot | Q94KL5 | 0.0 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | D7LG22 | 0.0 | D7LG22_ARALL; Uncharacterized protein | ||||
STRING | XP_010429329.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 0.0 | BEL1-like homeodomain 4 |
Publications ? help Back to Top | |||
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