PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g087930.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 642aa    MW: 71078 Da    PI: 6.9008
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g087930.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.81e-094594961954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  Csa09g087930.1 459 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 496
                     665569******************************88 PP

2BELL123.77.6e-40317388172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda+a q+
  Csa09g087930.1 317 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQL 388
                     589******************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-84244386IPR006563POX domain
PfamPF075261.5E-51250385IPR006563POX domain
PROSITE profilePS5007112.86437500IPR001356Homeobox domain
SMARTSM003891.1E-9440504IPR001356Homeobox domain
CDDcd000868.41E-13440501No hitNo description
SuperFamilySSF466891.28E-17441507IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28443506IPR009057Homeodomain-like
PfamPF059202.9E-18457496IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MGLATTTFHQ YQNSDSSMSQ DYHHHQGIFS FSNGFHRSSS TTHHEEEVDE SAVSGAQIPV  60
YETAGMLSEM FAFPGGGGGG SGGEILDQSS TKQLLEQQNR HNNNNNNSTL HMLLPNHHQG  120
FAFTDENTMH QQQQQHFTWP SSSDHHQNRD MIGTVHVEGR KGLSLSLSSS LAAAKAEEYR  180
SIYCAAVDGT SSSTNASAHH HQFNQFKNLV LDNSSSSHHH HHQHQVVGHF GSSSSSPMAA  240
SSSIGGIYTL RNSKYTKPAQ ELLEEFCSVG RGHFKKNKLS RNNSNPNTTG GGGGGVGGGS  300
SSSAGTANDN PPLSPADRIE HQRRKVKLLS MLEEVDRRYN HYCEQMQMVV NSFDQVMGYG  360
AAVPYTTLAQ KAMSRHFRCL KDAVAVQLKR SCELLGDKEA AGAASSGLTK GETPRLRLLE  420
QSLRQQRAFH HMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLNPYPSDA DKHLLARQTG  480
LSRNQVSNWF INARVRLWKP MVEEMYQQEA KEREEEAEEN ENQQQRRQQQ TNNNDTKPNN  540
NENNFTVITA QTPTTMTSTH HDSDSSFLLP SVAAASHGGS DAFTVTTCQQ DVSDFHVDDG  600
VNVIRFGTKQ PGDVSLTLGL RHSGNIPDKN TSFSVRDFGD F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-16446503158Homeobox protein Meis1
4xrs_B9e-16446503158Homeobox protein Meis1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288299TGGGGGGVGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g087930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530920.0AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBankAY0581790.0AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBankAY1420190.0AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429329.10.0PREDICTED: BEL1-like homeodomain protein 4 isoform X3
RefseqXP_019085111.10.0PREDICTED: BEL1-like homeodomain protein 4 isoform X1
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLD7LG220.0D7LG22_ARALL; Uncharacterized protein
STRINGXP_010429329.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]