PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g087860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 309aa MW: 34338.7 Da PI: 4.4175

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g087860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.4	1e-42	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp ++p+kf +vh++FGasnv+k+l++l++++re++++sl+yeAear+rdP+yG+vg+i+ lqq l++++++l+ Csa09g087860.1 5 PCAACKLLRRKCTQECVFAPYFPPTNPQKFICVHRVFGASNVTKILNDLHPDQREETVNSLFYEAEARIRDPIYGCVGLISFLQQYLKKVQQDLV 99 7********************************************************************************************** PP DUF260 96 llkee 100 ++kee Csa09g087860.1 100 TAKEE 104 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038155	3.1E-113	2	306	IPR017414	LOB domain-containing protein 10/36/41
PROSITE profile	PS50891	27.04	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MASTPCAACK LLRRKCTQEC VFAPYFPPTN PQKFICVHRV FGASNVTKIL NDLHPDQREE 60 TVNSLFYEAE ARIRDPIYGC VGLISFLQQY LKKVQQDLVT AKEELSGYMG PDAVIPPPYL 120 PPLGNNPPPN FMMSMEGMPP GVIPQGEPLM IREPNLSQQH QPQDDQLQFM ASDAQRMAAM 180 MMERGDQQGM FNGYGIDNNG SVTATGYNQM DVNDHGAGGS LSGPSLALGS FGDPYQMGQE 240 ADHGHIHHDQ LQTQLMLQPP LQEGQEQTEE GQFLMQPMGQ ENLHEEEEEG ELEPPVKWRK 300 SENKEASF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	2	108	8	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	2	108	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g087860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473835	0.0	AB473835.1 Arabidopsis thaliana ASL2 mRNA for ASYMMETRIC LEAVES2-like 2 protein, complete cds.
GenBank	AC003040	0.0	AC003040.3 Arabidopsis thaliana chromosome 2 clone F26B6 map CIC06C07, complete sequence.
GenBank	AC004482	0.0	AC004482.3 Arabidopsis thaliana chromosome 2 clone F27L4 map CIC06C07, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019085798.1	0.0	PREDICTED: LOB domain-containing protein 10
Swissprot	O64836	0.0	LBD10_ARATH; LOB domain-containing protein 10
TrEMBL	R0HZB7	0.0	R0HZB7_9BRAS; Uncharacterized protein
STRING	XP_010429315.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14908	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23660.2	1e-146	LOB domain-containing protein 10

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]