PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g087580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 307aa    MW: 32933.7 Da    PI: 6.5245
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g087580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ll  +v+++G+++W++I++ ++ gR +k+c++rw + 
   Csa09g087580.1 13 KGPWSPEEDDLLQTLVEKHGPRNWSLISKSIP-GRPGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding53.45.9e-1768109447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
   Csa09g087580.1  68 FTAEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                      8******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.946863IPR017930Myb domain
SuperFamilySSF466893.67E-3110106IPR009057Homeodomain-like
SMARTSM007171.5E-161261IPR001005SANT/Myb domain
PfamPF002492.2E-181358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-251466IPR009057Homeodomain-like
CDDcd001671.59E-151557No hitNo description
SMARTSM007175.6E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129419.34265114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2267113IPR009057Homeodomain-like
CDDcd001672.05E-1168110No hitNo description
PfamPF002491.7E-1468109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSGSTRKEMD RIKGPWSPEE DDLLQTLVEK HGPRNWSLIS KSIPGRPGKS CRLRWCNQLS  60
PEVEHRGFTA EEDDTIIRAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCSGGEEG  120
QSGGYDGSLT DEQPLKRTAS GGGGGVGLVL TALSPTGSDV SEQSSGSVLP SSHVFKPTAR  180
AGGVVISLSS SEEAELKDPV TYLSLSLPWV KESTPVRRDT AELFPVKREE EEEEKERGIN  240
GFGGDFMTVL QEMIKTEVRS YMTDLHLGNG GGNGGGGGGG ASSCMVQGSN GRNVGFREFI  300
GIGKIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-40121143105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-40121143105C-Myb DNA-Binding Domain
1msf_C7e-40121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00274DAPTransfer from AT2G23290Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g087580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010429274.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-131MYB73_ARATH; Transcription factor MYB73
TrEMBLV4LUU21e-159V4LUU2_EUTSA; Uncharacterized protein
STRINGXP_010429274.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-141myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]