PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g087120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRF
Protein Properties Length: 535aa    MW: 57113.9 Da    PI: 9.5671
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g087120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.27.7e-25202246145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Csa09g087120.1 202 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 246
                     79****************************************985 PP

2QLQ51.53.1e-18138174137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++F+ +Q+++L++Q+l+yKy+ an+PvP+ Ll+ ++k
  Csa09g087120.1 138 GPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKK 174
                     59******************************99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-10138174IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.723139174IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.2E-12139171IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.954202246IPR014977WRC domain
PfamPF088793.5E-21203245IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MDLGVRVSSH ETGSSPPGQT ELGSGFINNN KQERSGFDGE DCWRSSKLSR TSSTTDGFSS  60
SSTSAAAKTL SFHQGIPLLR STTIDPRRGQ EHMLSFSSAS DKSDVSPYLQ YCRNSGYGLG  120
GMMNTSSMHG NLLTGVKGPF SLTQWAELEQ QALIYKYITA NVPVPSSLLL SLKKSFFPYG  180
SLPPNSFGWG SFHLGFSGGN MDPEPGRCRR TDGKKWRCSR DAVPDQKYCE RHINRGRHRS  240
RKPVEGQNGH NTNAAAASAA ASTAASVSKA AGTSAVAAMR GLDNVNNSLA AAVRTHHHAN  300
TNQSTDSLAT RVQNSRAASV FPTAMNLQQK DPHPKQTNNN NPFEFGLISS DSLLNPSHKQ  360
ASYGNSSKGF GSYLDFSNQA KHSGNHNNDD SWPEELKSDW TQLSMSIPMA PSSPVQDNKL  420
PLSPLRLSRE FDLGLGVNTE FLEPGKKANN WIPISWGNNN SMGGPLGEVL NSTTNSPKFG  480
SSPTGVLQKS TFGSLSNSSS GSSTVIGDNN NKNGDGKDPL GPTTLMNTSA TAPL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g087120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935600.0AB493560.1 Arabidopsis thaliana At2g22840 mRNA for hypothetical protein, partial cds, clone: RAAt2g22840.
GenBankAY1026340.0AY102634.1 Arabidopsis thaliana transcription activator (GRF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010472281.10.0PREDICTED: growth-regulating factor 1
SwissprotO810010.0GRF1_ARATH; Growth-regulating factor 1
TrEMBLA0A178VNQ30.0A0A178VNQ3_ARATH; GRF1
STRINGXP_010472281.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.10.0growth-regulating factor 1
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]