PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g087120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRF | ||||||||
Protein Properties | Length: 535aa MW: 57113.9 Da PI: 9.5671 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.2 | 7.7e-25 | 202 | 246 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Csa09g087120.1 202 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 246 79****************************************985 PP | |||||||
2 | QLQ | 51.5 | 3.1e-18 | 138 | 174 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++F+ +Q+++L++Q+l+yKy+ an+PvP+ Ll+ ++k Csa09g087120.1 138 GPFSLTQWAELEQQALIYKYITANVPVPSSLLLSLKK 174 59******************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-10 | 138 | 174 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.723 | 139 | 174 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.2E-12 | 139 | 171 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.954 | 202 | 246 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-21 | 203 | 245 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 535 aa Download sequence Send to blast |
MDLGVRVSSH ETGSSPPGQT ELGSGFINNN KQERSGFDGE DCWRSSKLSR TSSTTDGFSS 60 SSTSAAAKTL SFHQGIPLLR STTIDPRRGQ EHMLSFSSAS DKSDVSPYLQ YCRNSGYGLG 120 GMMNTSSMHG NLLTGVKGPF SLTQWAELEQ QALIYKYITA NVPVPSSLLL SLKKSFFPYG 180 SLPPNSFGWG SFHLGFSGGN MDPEPGRCRR TDGKKWRCSR DAVPDQKYCE RHINRGRHRS 240 RKPVEGQNGH NTNAAAASAA ASTAASVSKA AGTSAVAAMR GLDNVNNSLA AAVRTHHHAN 300 TNQSTDSLAT RVQNSRAASV FPTAMNLQQK DPHPKQTNNN NPFEFGLISS DSLLNPSHKQ 360 ASYGNSSKGF GSYLDFSNQA KHSGNHNNDD SWPEELKSDW TQLSMSIPMA PSSPVQDNKL 420 PLSPLRLSRE FDLGLGVNTE FLEPGKKANN WIPISWGNNN SMGGPLGEVL NSTTNSPKFG 480 SSPTGVLQKS TFGSLSNSSS GSSTVIGDNN NKNGDGKDPL GPTTLMNTSA TAPL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:22419826, ECO:0000269|PubMed:22751317}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g087120.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493560 | 0.0 | AB493560.1 Arabidopsis thaliana At2g22840 mRNA for hypothetical protein, partial cds, clone: RAAt2g22840. | |||
GenBank | AY102634 | 0.0 | AY102634.1 Arabidopsis thaliana transcription activator (GRF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010472281.1 | 0.0 | PREDICTED: growth-regulating factor 1 | ||||
Swissprot | O81001 | 0.0 | GRF1_ARATH; Growth-regulating factor 1 | ||||
TrEMBL | A0A178VNQ3 | 0.0 | A0A178VNQ3_ARATH; GRF1 | ||||
STRING | XP_010472281.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1454 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 0.0 | growth-regulating factor 1 |
Publications ? help Back to Top | |||
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