PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g086760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 321aa MW: 36009.6 Da PI: 4.3456

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g086760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	65	118	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Csa09g086760.1 65 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 118 5568999**********************************************9 PP
2	HD-ZIP_I/II	127.5	5.7e-41	64	156	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlEkdy Lk++yd+l+ + ++L++++e+L +e+++ Csa09g086760.1 64 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEKDYGLLKSQYDSLRLNFDSLRRDNESLLQEISK 156 69*************************************************************************************999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.61E-19	58	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.297	60	120	IPR001356	Homeobox domain
SMART	SM00389	3.4E-17	63	124	IPR001356	Homeobox domain
CDD	cd00086	3.32E-15	65	121	No hit	No description
Pfam	PF00046	1.5E-15	65	118	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.4E-19	67	127	IPR009057	Homeodomain-like
PRINTS	PR00031	9.1E-6	91	100	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
PRINTS	PR00031	9.1E-6	100	116	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.9E-16	120	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MMKRLSSSDS VGGLISLCPT TSQDEQSPRR YGGREFQSML LEGYEEEEEA IVEERGGHVG 60 GMSEKKRRLS INQVKALEKN FELENKLEPE RKVKLAQELG LQPRQVAVWF QNRRARWKTK 120 QLEKDYGLLK SQYDSLRLNF DSLRRDNESL LQEISKLKTK LNGGEGEEEE EEEEEENNAA 180 AATTESDISV KEEEVSLPEK MTEPPPSPPQ FLEHSDGLNY RSFTDLRDLL PLKGAAASSF 240 AAAGSSDSSD SSALLNEESS SNVTVAAPVT AAPQSNFFQF VKMEQTEDHG DFLSGEEACE 300 FFSDEQPPSL HWYSTVDHWN *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g086760.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY060569	0.0	AY060569.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBank	AY063819	0.0	AY063819.1 Arabidopsis thaliana putative homeodomain transcription factor ATHB-6 (At2g22430) mRNA, complete cds.
GenBank	AY094457	0.0	AY094457.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBank	AY122903	0.0	AY122903.1 Arabidopsis thaliana At2g22430/F14M13.17 mRNA, complete cds.
GenBank	X67034	0.0	X67034.1 A.thaliana mRNA Athb-6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429165.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Swissprot	P46668	1e-176	ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBL	A0A178VSN9	1e-173	A0A178VSN9_ARATH; HB6
STRING	XP_010429165.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-134	homeobox protein 6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]