PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g084650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARF
Protein Properties Length: 590aa    MW: 64147.7 Da    PI: 6.0633
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g084650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23126227199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f k+ltpsd+++ g +++p+ +a++          ++ +  +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++s
  Csa09g084650.1 126 FAKILTPSDANNGGGFSVPRYCADSVfplldfaADPPVQ--KLFITDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNGKKLIAGDSVVFM--RKS 216
                     89*********************999*****97555555..7************************************************..447 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                       e++++v+r+
  Csa09g084650.1 217 HDEMFIGVRRA 227
                     88889***997 PP
2Auxin_resp86.45.7e-29286368183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+++a+++ +Fevv++P a++s+Fvv++e+ve+++++ +++G+R+kma+etedss++++ +G+v+++ + ++  W++S+W++L+
  Csa09g084650.1 286 AMNRAAKGLPFEVVFYPTAGWSDFVVRAEDVESSMSMYWTPGTRVKMAMETEDSSRITWfQGIVSSTFQ-ETGPWRGSPWKQLQ 368
                     67899******************************************************9999999888.8889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-28116232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-33118228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76126228IPR003340B3 DNA binding domain
PfamPF023625.2E-21126227IPR003340B3 DNA binding domain
CDDcd100173.43E-19126222No hitNo description
SMARTSM010191.1E-19126228IPR003340B3 DNA binding domain
PfamPF065071.3E-23286368IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MSPPSDSAAG DIHHRGVDPM IWRACAGASV QIPLLYSRVY YFPQGHVEHC CPSSPLVSTP  60
PPSTTPVPCI ISSIQLLADP ITDEVFAHLL LQPVSQEQFV PTNFSRFAGG YEGDVVDNNN  120
NKVTTFAKIL TPSDANNGGG FSVPRYCADS VFPLLDFAAD PPVQKLFITD IHGAVWDFRH  180
IYRGTPRRHL LTTGWSKFVN GKKLIAGDSV VFMRKSHDEM FIGVRRAPIS SSGGGTSYYG  240
GDEYNGYYSQ SNGFVPPPPK EDDGCAKKTF RRIGLGKLTA EAVSEAMNRA AKGLPFEVVF  300
YPTAGWSDFV VRAEDVESSM SMYWTPGTRV KMAMETEDSS RITWFQGIVS STFQETGPWR  360
GSPWKQLQIT WDEPEILQNV KRVNPWQVEM VANATQLHAS FPPATSFPPA KRLKYPHTGG  420
FLNGDDGEIH YPPQRGLSSA AAAPDSSPYM FPYTTFPAGM QGARHYEFGS YNPTGFIGEN  480
PPQLSTNNFF SPLPGLEKVS TEKNFGSQPS DNLSPNSNTT NQSSGNDLVG NRGPTPAKAN  540
SIKLFGKTIS VQEPSESGPA ESGLCEEDGS KESSDNTTQL SLTPGPKNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-621738951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g084650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428870.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLR0HYF10.0R0HYF1_9BRAS; Auxin response factor (Fragment)
STRINGXP_010428870.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]