PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g083760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 153aa MW: 17272 Da PI: 10.2559 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.3 | 1.6e-07 | 10 | 28 | 2 | 20 |
---SHHHHHHHHHHHHHHH CS SRF-TF 2 rienksnrqvtfskRrngi 20 rienks rqvtfskRrn + Csa09g083760.1 10 RIENKSSRQVTFSKRRNDL 28 8***************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.376 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-9 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-4 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-7 | 10 | 29 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MGRRKIEIRR IENKSSRQVT FSKRRNDLID SFRFSVNLPS PLSSSLPPEY STTLPPVTTC 60 PRSSSVMSYN MLMNIKAWIL RKKLGINYLP LKELLKMVQS KLEEPNVDNI SVDFLIFLGT 120 ARDCSVHRTD DGVCEVPSRK GEVAERREPG SG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of flowering time in both long and short days, probably through the photoperiodic and vernalization pathways. Prevents premature flowering. {ECO:0000269|PubMed:11351076, ECO:0000269|PubMed:14558654, ECO:0000269|PubMed:15695584, ECO:0000269|PubMed:18799658}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g083760.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly repressed by vernalization. Negatively regulated at the chromatin level by VIL1 through the photoperiod and vernalization pathways. Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:11351076, ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17114575}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF312665 | 1e-102 | AF312665.1 Arabidopsis thaliana MADS-box protein AGL27-I (AGL27) mRNA, complete cds. | |||
GenBank | AF342808 | 1e-102 | AF342808.1 Arabidopsis thaliana MADS affecting flowering 1 (MAF1) mRNA, complete cds. | |||
GenBank | AK117577 | 1e-102 | AK117577.1 Arabidopsis thaliana mRNA for (NM_148660) MADS affecting flowering 1(MAF1); protein id: At1g77080.4, supported by cDNA: 92459., supported by cDNA: gi_13649968, supported by cDNA: gi_16580104 [Arabidopsis thaliana] gb|AAK37527.1|AF342808_1 (AF342808) MADS affecting flowering 1 [Arabidopsis thaliana] gb|AAK54440.1| (AY034083) MADS box FLC1-like nuclear protein [Arabidopsis thaliana] gb|AAM67028.1| (AY088709) MADS affecting flowering 1 [Arabidopsis thaliana], complete cds, clone: RAFL17-22-J12. | |||
GenBank | AK175247 | 1e-102 | AK175247.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-67-N06. | |||
GenBank | AK176270 | 1e-102 | AK176270.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-17-J21. | |||
GenBank | AK227948 | 1e-102 | AK227948.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-50-E05. | |||
GenBank | AY034083 | 1e-102 | AY034083.1 Arabidopsis thaliana MADS box FLC1-like nuclear protein (FK1) mRNA, complete cds. | |||
GenBank | AY088709 | 1e-102 | AY088709.1 Arabidopsis thaliana clone 92459 mRNA, complete sequence. | |||
GenBank | BT004598 | 1e-102 | BT004598.1 Arabidopsis thaliana At1g77080 gene, complete cds. | |||
GenBank | KU936817 | 1e-102 | KU936817.1 Arabidopsis thaliana clone NSF24 flowering locus M splice variant (FLM) mRNA, partial sequence. | |||
GenBank | KU936821 | 1e-102 | KU936821.1 Arabidopsis thaliana clone NSF2 flowering locus M splice variant (FLM) mRNA, partial sequence. | |||
GenBank | KU936824 | 1e-102 | KU936824.1 Arabidopsis thaliana clone NSF1 flowering locus M splice variant (FLM) mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471874.1 | 5e-25 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X2 | ||||
Refseq | XP_019093941.1 | 2e-25 | PREDICTED: agamous-like MADS-box protein AGL27 isoform X3 | ||||
Swissprot | Q9AT76 | 2e-24 | AGL27_ARATH; Agamous-like MADS-box protein AGL27 | ||||
TrEMBL | A0A1P8ARE3 | 2e-22 | A0A1P8ARE3_ARATH; K-box region and MADS-box transcription factor family protein | ||||
STRING | XP_010428773.1 | 1e-23 | (Camelina sativa) | ||||
STRING | XP_010471873.1 | 9e-24 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77080.5 | 2e-17 | MIKC_MADS family protein |