PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g081160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 395aa    MW: 45224.1 Da    PI: 10.2062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g081160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1707.6e-53621901129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL+ k+ +  l+   +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++ 
  Csa09g081160.1  62 LPPGFRFHPTDEELITFYLASKIFHGGLSG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFAG 155
                     79*************************999.78***************988999***************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +g lvg+kktLvfykgrap+g kt+Wvmheyrle
  Csa09g081160.1 156 sGGPLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 190
                     67778****************************85 PP
2NAM135.92.6e-4219931414129
             NAM  14 lvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLv 107
                      +++yL+ k+ +  l+   +i+evd++++ePw+Lp+++k +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++  +g lvg+kktLv
  Csa09g081160.1 199 FITFYLASKIFHGGLSG-IHISEVDLNRCEPWELPEMAKMGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFAGsGGPLVGMKKTLV 292
                     6999**********999.78***************988999***************************************9867778******** PP

             NAM 108 fykgrapkgektdWvmheyrle 129
                     fykgrap+g kt+Wvmheyrle
  Csa09g081160.1 293 FYKGRAPRGLKTKWVMHEYRLE 314
                     ********************85 PP
3NAM76.18.2e-2432238270129
             NAM  70 tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     t  r+nrat++gyWkatgkdkev++  +g lvg+kktLvfykgrap+g kt+Wvmheyrle
  Csa09g081160.1 322 TCLRTNRATTAGYWKATGKDKEVFAGsGGPLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 382
                     4569********************9867778****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-5757195IPR003441NAC domain
PROSITE profilePS5100554.21962211IPR003441NAC domain
PfamPF023651.6E-2663189IPR003441NAC domain
PfamPF023659.8E-17199313IPR003441NAC domain
SuperFamilySSF1019411.96E-45200319IPR003441NAC domain
PROSITE profilePS5100533.478218328IPR003441NAC domain
SuperFamilySSF1019413.66E-24322387IPR003441NAC domain
PROSITE profilePS5100521.037325394IPR003441NAC domain
PfamPF023659.2E-12326381IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
TIRLYFPSPF LSFALFVLPF GVSSVQNNKS LFFFGYNNQK MMLAVEDVLS ELAGEEKNER  60
GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN RCEPWELPEM AKMGEKEWYF  120
YSLRDRKYPT GLRTNRATTA GYWKATGKDK EVFAGSGGPL VGMKKTLVFY KGRAPRGLKT  180
KWVMHEYRLE TDLSHRHTFI TFYLASKIFH GGLSGIHISE VDLNRCEPWE LPEMAKMGEK  240
EWYFYSLRDR KYPTGLRTNR ATTAGYWKAT GKDKEVFAGS GGPLVGMKKT LVFYKGRAPR  300
GLKTKWVMHE YRLETDLSHR HTCLRTNRAT TAGYWKATGK DKEVFAGSGG PLVGMKKTLV  360
FYKGRAPRGL KTKWVMHEYR LETDLSHRHT CKVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-45553818140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g081160.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9712550.0AB971255.1 Rorippa aquatica RaCUC3 mRNA for cup-shaped cotlyedon 3, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301620.11e-110protein CUP-SHAPED COTYLEDON 3
RefseqXP_010431534.11e-111PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-107NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0E0F9351e-107A0A0E0F935_9ORYZ; Uncharacterized protein
TrEMBLR0ID001e-108R0ID00_9BRAS; Uncharacterized protein
STRINGXP_006301620.11e-109(Capsella rubella)
STRINGXP_010431534.11e-110(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-109NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]