PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g081150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 271aa    MW: 30471.3 Da    PI: 7.7701
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g081150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.11.8e-3278453129
             NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +ekewyf+s rd+ky+tg r+nrat++gyWkatgkdkev++  +g lvg+kktLvfykgrap+g kt+Wvmheyrle
  Csa09g081150.1   7 MGEKEWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFAGsGGPLVGMKKTLVFYKGRAPRGLKTKWVMHEYRLE 84 
                     4689*************************************9867778****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.1841105IPR003441NAC domain
SuperFamilySSF1019415.1E-387105IPR003441NAC domain
PfamPF023659.6E-151183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MIPIKTMGEK EWYFYSLRDR KYPTGLRTNR ATTAGYWKAT GKDKEVFAGS GGPLVGMKKT  60
LVFYKGRAPR GLKTKWVMHE YRLETDLSHR HTCKEEWVIC RVFNKSGDRK NVGIHNQISY  120
LHNHSLSTTH HHDTLPMLLE ASNKTLTNFP SLLYDDPHQN YNNNLIHGSS GHNLDELKAL  180
INPVVSQLNG IIFSPGNNNN NNDEDDFGFN LGVKTEPSSN GVINNNELDV RDYLENPLFQ  240
EASYGLLGLS SSPGPLHMLL DSPCPLGFQL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-31110661166NO APICAL MERISTEM PROTEIN
1ut4_B2e-31110661166NO APICAL MERISTEM PROTEIN
1ut7_A2e-31110661166NO APICAL MERISTEM PROTEIN
1ut7_B2e-31110661166NO APICAL MERISTEM PROTEIN
3swm_A2e-31110664169NAC domain-containing protein 19
3swm_B2e-31110664169NAC domain-containing protein 19
3swm_C2e-31110664169NAC domain-containing protein 19
3swm_D2e-31110664169NAC domain-containing protein 19
3swp_A2e-31110664169NAC domain-containing protein 19
3swp_B2e-31110664169NAC domain-containing protein 19
3swp_C2e-31110664169NAC domain-containing protein 19
3swp_D2e-31110664169NAC domain-containing protein 19
4dul_A2e-31110661166NAC domain-containing protein 19
4dul_B2e-31110661166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g081150.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431533.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9S8511e-150NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLR0ID001e-169R0ID00_9BRAS; Uncharacterized protein
STRINGXP_010431533.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-130NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]