PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g081030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 210aa MW: 24312.1 Da PI: 8.1405 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.2 | 1e-26 | 12 | 97 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ dgkw+v+++++eHnH+l p Csa09g081030.1 12 YYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRPSPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLP 97 8****************************************99887....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-24 | 12 | 97 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEFETHEDAY LYYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RPSPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HFFRSHRNNN EPVKLNDGRR 120 KKNSPLADCK HLSAYNDLDF IDGYIRNNHD KGRRLLEVLG AAACHLTKES EEGTTYSVKD 180 FDDDQKYFVD WDEFKCFHHS DQLCAAKVD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g081030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009978 | 1e-139 | AC009978.3 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence. | |||
GenBank | AC012394 | 1e-139 | AC012394.3 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence. | |||
GenBank | AK221406 | 1e-139 | AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06. | |||
GenBank | BT010456 | 1e-139 | BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-139 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428686.1 | 1e-108 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X2 | ||||
Refseq | XP_010428687.1 | 1e-108 | PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1 | ||||
Swissprot | Q6NQJ7 | 2e-94 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | R0I6J3 | 8e-94 | R0I6J3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010428687.1 | 1e-107 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 6e-92 | FAR1-related sequence 4 |
Publications ? help Back to Top | |||
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