PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g080030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TALE | ||||||||
Protein Properties | Length: 538aa MW: 61548.7 Da PI: 6.855 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.7 | 1.1e-09 | 380 | 417 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ L+k++gL+++qV +WF N R + Csa09g080030.1 380 FEHflHPYPKESEKIMLSKQTGLSKNQVANWFINARVR 417 665559******************************88 PP | |||||||
2 | BELL | 125.3 | 2.3e-40 | 243 | 314 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk+kLl++++eVdkrY+qy++q+++++ssFe+v+glg+akpYts+Al++iSrhFrcL+dai+eqi Csa09g080030.1 243 ERQELQNKKSKLLTMVDEVDKRYNQYHHQMEALASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQI 314 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.2E-51 | 173 | 312 | IPR006563 | POX domain |
Pfam | PF07526 | 5.5E-48 | 179 | 310 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.066 | 358 | 421 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.33E-11 | 361 | 422 | No hit | No description |
SMART | SM00389 | 1.9E-9 | 361 | 425 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.55E-17 | 362 | 428 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-28 | 364 | 427 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-17 | 378 | 417 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MAVYYPNSVG MQSMYHESIY LNEQQQQQQQ QATSSSAASF SEIVSGDVRH NNEMVFIPPT 60 TSDVAVNGNV TVSSNDLSFH GGGLSLSLGN QIQSAVSVSP FQYHYQNLSN QLNYNNASTM 120 SPDENGKSLS GHHHHHHHHQ QQQHHSDQMI PSSGYNNNNN GVGFYNNYRY ETSGFVSSVL 180 RSRYLKPTQQ LLDEVVSVRK ELKLGNKKMK NNDKGQDFQN GSSDNNITED EKPQQSQELS 240 PSERQELQNK KSKLLTMVDE VDKRYNQYHH QMEALASSFE MVTGLGAAKP YTSVALNRIS 300 RHFRCLRDAI KEQIQVIRGK LGERETSDEQ GERIPRLRYL DQRLRQQRAL HQQLGMVRPA 360 WRPQRGLPEN SVSILRAWLF EHFLHPYPKE SEKIMLSKQT GLSKNQVANW FINARVRLWK 420 PMIEEMYKEE FGDSELETNS NQDNNKTQET SQLKHEESSS QQHNQGNINN NNIAYTSHGE 480 ENLVFADPKP DRATTGEYDS LMNYHGFGID DYNRYVGLGN QQDARFSNPH QLHDFVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-15 | 367 | 425 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-15 | 367 | 425 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g080030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF353093 | 0.0 | AF353093.1 Arabidopsis thaliana BEL1-like homeodomain 3 (BLH3) mRNA, complete cds. | |||
GenBank | AY062545 | 0.0 | AY062545.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410; F1B16.6) mRNA, complete cds. | |||
GenBank | AY085278 | 0.0 | AY085278.1 Arabidopsis thaliana clone 142443 mRNA, complete sequence. | |||
GenBank | AY598452 | 0.0 | AY598452.1 Arabidopsis thaliana BEL1-like homeodomain 3 protein mRNA, complete cds. | |||
GenBank | BT000133 | 0.0 | BT000133.1 Arabidopsis thaliana Similar to homeodomain proteins (At1g75410) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428562.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 3 | ||||
Swissprot | Q9FWS9 | 0.0 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | R0IEB0 | 0.0 | R0IEB0_9BRAS; Uncharacterized protein | ||||
STRING | XP_010428562.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75410.2 | 0.0 | BEL1-like homeodomain 3 |
Publications ? help Back to Top | |||
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