PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g079030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 357aa MW: 40852 Da PI: 6.6079

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g079030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	69.9	2.3e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrq t+skRr gilKKA ELSvLCd+++ +++fs+tg+ Csa09g079030.1 9 KRLESSSNRQNTYSKRRSGILKKARELSVLCDIDIVLLMFSPTGR 53 689****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.32	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.2E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-23	2	94	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-19	11	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MGRVKLMIKR LESSSNRQNT YSKRRSGILK KARELSVLCD IDIVLLMFSP TGRPTALHGH 60 HRCIGDVISK FAQLTPQERS KRKLESLESL KKTFMKLDHD GNINEVFLGA RNQTIEVLTN 120 QVAFFQAQVM ECHKRLSRWT DIVRTENIEH LEHLGVSLGN SIERVQIHKE HFRKNQLLLV 180 ECTTTQFHSG ISSPLVVNGI QENHLISWLP DYSYQQMIIP ADSSFLPHCE MEHTATASLP 240 VYSSFCESRI QEDQNCNLEQ QFDRLREEGN VLNELNGNSC SSLQLGKEYS YLTQFGMQEE 300 KKLQSGFEFN FQQDLSMYPV SNSFQSPDQP VFAATDHHQT CSNPVFDHSD NNQQSD*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MGRVKLMIKR LESSSNRQNT YSKRRSGILK KARELSVLCD IDIVLLMFSP TGRPTALHGH  60
HRCIGDVISK FAQLTPQERS KRKLESLESL KKTFMKLDHD GNINEVFLGA RNQTIEVLTN  120
QVAFFQAQVM ECHKRLSRWT DIVRTENIEH LEHLGVSLGN SIERVQIHKE HFRKNQLLLV  180
ECTTTQFHSG ISSPLVVNGI QENHLISWLP DYSYQQMIIP ADSSFLPHCE MEHTATASLP  240
VYSSFCESRI QEDQNCNLEQ QFDRLREEGN VLNELNGNSC SSLQLGKEYS YLTQFGMQEE  300
KKLQSGFEFN FQQDLSMYPV SNSFQSPDQP VFAATDHHQT CSNPVFDHSD NNQQSD*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g079030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF705604	1e-140	KF705604.1 Boechera sp. IPK Bsp 9 isolate BAC5_7 APOLLO gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428431.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X2
Swissprot	Q7X9I0	1e-134	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A078J4M2	1e-132	A0A078J4M2_BRANA; BnaC08g49460D protein
TrEMBL	A0A3P5YL32	1e-132	A0A3P5YL32_BRACM; Uncharacterized protein
STRING	XP_010428430.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-121	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]