PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g079000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 279aa    MW: 31393.5 Da    PI: 6.2597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g079000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.7e-122061748
                     HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     eEd +lv +++++G g W + +++ g+ R++k+c++rw++yl
   Csa09g079000.1 20 EEDRKLVAYINEHGLGEWGSMPKRAGLQRCGKSCRLRWLNYL 61
                     9***************************************97 PP
2Myb_DNA-binding60.24.4e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+e +++++++lG++ W++Ia+ m+ +Rt++++k++w++ 
   Csa09g079000.1  67 RGKFTPQEEEEIIKYHALLGNR-WAAIAKQMP-NRTDNDIKNHWNSC 111
                      89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.303961IPR017877Myb-like domain
SMARTSM007176.5E-81363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-201868IPR009057Homeodomain-like
SuperFamilySSF466896.36E-2618108IPR009057Homeodomain-like
CDDcd001673.88E-81861No hitNo description
PfamPF002497.1E-112061IPR001005SANT/Myb domain
PROSITE profilePS5129427.54462116IPR017930Myb domain
SMARTSM007173.8E-1766114IPR001005SANT/Myb domain
PfamPF002491.1E-1767111IPR001005SANT/Myb domain
CDDcd001678.17E-1269109No hitNo description
Gene3DG3DSA:1.10.10.603.7E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRTTWLDVD GMRKGEGTGE EDRKLVAYIN EHGLGEWGSM PKRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TPQEEEEIIK YHALLGNRWA AIAKQMPNRT DNDIKNHWNS CLKKRLAKSG  120
IDPMTHQPKS PTVDVTSSST TSSPIPSPCS SSFSSSSSST TGSARLLNKL ATGISSRRHG  180
LERMKTVILS EQPREAEIEE EEKMVIRMGE DEMIACFMET DEKLNMRELP CDHVSAALTT  240
TSSPCFMAFD DYSSTIDQYT LYESDFYDET QQLDLFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g079000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2172050.0AF217205.2 Arabidopsis thaliana putative transcription factor (MYB95) mRNA, complete cds.
GenBankAK1183810.0AK118381.1 Arabidopsis thaliana At1g74430 mRNA for putative transcription factor (MYB95), complete cds, clone: RAFL19-64-J20.
GenBankAY5195700.0AY519570.1 Arabidopsis thaliana MYB transcription factor (At1g74430) mRNA, complete cds.
GenBankBT0052720.0BT005272.1 Arabidopsis thaliana At1g74430 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428427.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LE631e-59MY106_ARATH; Transcription factor MYB106
TrEMBLR0GI521e-137R0GI52_9BRAS; Uncharacterized protein
STRINGXP_010428427.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74430.11e-124myb domain protein 95