PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g078440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 404aa    MW: 45208.4 Da    PI: 4.4937
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g078440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-072264640
        zf-B_box  6 CpeHeeke..lqlfCedCqqllCedClleeHkg......Htvv 40
                    C+ + +    ++++C  ++ +lC++C  ++H+       H++v
  Csa09g078440.1 22 CDVCMKRSsrASWYCPADDAFLCQSCDASIHSAnnlakrHERV 64
                    8888853334*********************657788888876 PP
2CCT68.91.3e-23353396144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Csa09g078440.1 353 REARVLRYREKRRTRLFAKKIRYEVRKLNAEQRPRIKGRFVKRT 396
                     9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.0E-111766IPR000315B-box-type zinc finger
PROSITE profilePS501199.3141766IPR000315B-box-type zinc finger
CDDcd000211.61E-92266No hitNo description
PfamPF006436.0E-62364IPR000315B-box-type zinc finger
PROSITE profilePS5101716.202353395IPR010402CCT domain
PfamPF062036.1E-18353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MVVEVESRAA GVTGVKTAAR GCDVCMKRSS RASWYCPADD AFLCQSCDAS IHSANNLAKR  60
HERVRLQSPS SPELLMKTKA TDKTTSVWYE GFRRKARTPR SKQLQDVNNS NDPLVPELGV  120
EEEEEEEGVF SFSSTDENEE SLNCCVPVFD PFSDMVIDDN SFGLVPDGVD ITTSTSADLG  180
EIEKAIMDDD EGLIGFLPFD MDLGEIVMDV ESLLEEEQPF LRVKELNSSG LVKEETNVGF  240
EFDSKDLKRV KDEEEEVVKC EHGGSDQEAC EDEDRKASLF LRLDYEAVIS AWDNHGSPWE  300
TGIKPEFNLD GCLLGGNNTC PSHVMGGFEE LASAVRSVTR QQGRDGGGSD VEREARVLRY  360
REKRRTRLFA KKIRYEVRKL NAEQRPRIKG RFVKRTSLNF DVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363379RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g078440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0166623e-59AC016662.7 Arabidopsis thaliana chromosome 1 BAC F2P9 genomic sequence, complete sequence.
GenBankBT0157403e-59BT015740.1 Arabidopsis thaliana At1g73870 mRNA, complete cds.
GenBankBT0201833e-59BT020183.1 Arabidopsis thaliana At1g73870 mRNA, complete cds.
GenBankCP0026843e-59CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428333.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 7-like
SwissprotQ9C9A90.0COL7_ARATH; Zinc finger protein CONSTANS-LIKE 7
TrEMBLR0IES10.0R0IES1_9BRAS; Uncharacterized protein
STRINGXP_010428333.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1750679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.11e-180B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]