PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa09g077920.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 727aa MW: 79300.3 Da PI: 6.6434 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 33 | 88 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p++++r +L+++lgL rq+k+WFqNrR++ k Csa09g077920.2 33 KKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQLK 88 688999**********************************************9877 PP | |||||||
2 | START | 148.1 | 8.1e-47 | 237 | 457 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 +a++a++el+++ +ep+W+k +++n + +f++s + +++ea+r sg+v+m+++ lv ++d + + +a+ +tl+v Csa09g077920.2 237 IALTAMEELLRLLHTNEPLWTKTDgsrDILNLGSYENIFPRSSNrgknhnFRVEASRSSGIVFMNAMALVDMFMDCVKcaeLFPSIIAASKTLAV 331 6899******************99999*************999999****************************99988889999999******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 iss gal+l + e+ +lsplv+ R+ +Ry++q ++g+wv+v vS d +q+++ +s++ R +pSg+li++++ng+skvtwveh++ Csa09g077920.2 332 ISSRmggtheGALHLLYEEMEVLSPLVAtREICELRYCQQIEQGSWVVVNVSYDLPQFVS-HSQSFR---FPSGCLIQDMPNGYSKVTWVEHIET 422 ***999******************************************************.9****9...************************* PP -SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++ p h+l+r +++ g+a+ga +w+ tlqr ce+ Csa09g077920.2 423 EEKEPiHELYREMIHDGIAFGAERWLTTLQRMCER 457 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-20 | 14 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 19 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.155 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 31 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.86E-19 | 33 | 91 | No hit | No description |
Pfam | PF00046 | 3.1E-17 | 33 | 88 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.794 | 227 | 460 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-30 | 228 | 459 | No hit | No description |
CDD | cd08875 | 5.15E-99 | 231 | 456 | No hit | No description |
SMART | SM00234 | 8.8E-37 | 236 | 457 | IPR002913 | START domain |
Pfam | PF01852 | 2.3E-39 | 237 | 457 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.9E-6 | 284 | 425 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.82E-20 | 478 | 714 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 727 aa Download sequence Send to blast |
MSFVVGVGGS GSGSGGDGGG SQHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK 60 QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK AENDKIRCEN IAIREALKHA 120 ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP 180 LDLSMTSLTG CGPCGHGPSL DFDLLPGSSM SVSGHNNLQS QPNLAISDMD KPLMTGIALT 240 AMEELLRLLH TNEPLWTKTD GSRDILNLGS YENIFPRSSN RGKNHNFRVE ASRSSGIVFM 300 NAMALVDMFM DCVKCAELFP SIIAASKTLA VISSRMGGTH EGALHLLYEE MEVLSPLVAT 360 REICELRYCQ QIEQGSWVVV NVSYDLPQFV SHSQSFRFPS GCLIQDMPNG YSKVTWVEHI 420 ETEEKEPIHE LYREMIHDGI AFGAERWLTT LQRMCERFAS LSVPASSSRD LGGVIPSPEG 480 KRSMMRLAQR MISNYCLSVS RSNNTRSTVV SELNEVGVRV TAHKSPEPNG TVLCAATTFW 540 LPNSPQNVFN FLKDERTRPQ WDVLSNGNSV QEVAHISNGS HPGNCISVLR ASNASQSNNM 600 LILQESSTDS SGALVVYSPV DLSALNIAMS GEDPSYIPLL SSGFAISPDG NGSTSEQGGG 660 ASTSSGRSSS SNSSGSLITV GFQIMVSNLP SAKLNMESVE TVNNLIGTTV HQIKTALSGP 720 TASTTA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa09g077920.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT003979 | 0.0 | BT003979.1 Arabidopsis thaliana clone RAFL15-10-L20 (R20587) putative homeobox protein (At1g73360) mRNA, complete cds. | |||
GenBank | BT004915 | 0.0 | BT004915.1 Arabidopsis thaliana clone U20587 putative homeobox protein (At1g73360) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428260.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | R0I7H5 | 0.0 | R0I7H5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010428260.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |