PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g077920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 730aa MW: 79506.7 Da PI: 7.0095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 33 | 88 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+ F+++++p++++r +L+++lgL rq+k+WFqNrR++ k Csa09g077920.1 33 KKRYHRHTAQQIQRLESSFKECPHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQLK 88 688999**********************************************9877 PP | |||||||
2 | START | 124.9 | 1e-39 | 237 | 460 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 +a++a++el+++ +ep+W+k +++n + +f++s + +++ea+r sg+v+m+++ lv ++d + + +a+ +tl+v Csa09g077920.1 237 IALTAMEELLRLLHTNEPLWTKTDgsrDILNLGSYENIFPRSSNrgknhnFRVEASRSSGIVFMNAMALVDMFMDCVKcaeLFPSIIAASKTLAV 331 6899******************99999*************999999****************************99988889999999******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE....EEEEEEE CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh....skvtwve 168 iss gal+l + e+ +lsplv+ R+ +Ry++q ++g+wv+v vS d +q+++ +s++ R +pSg+li++++ng+ + ++ + Csa09g077920.1 332 ISSRmggtheGALHLLYEEMEVLSPLVAtREICELRYCQQIEQGSWVVVNVSYDLPQFVS-HSQSFR---FPSGCLIQDMPNGYskvnTSFFLIP 422 ***999******************************************************.9****9...**************88888889*** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +v lk+ +h+l+r +++ g+a+ga +w+ tlqr ce+ Csa09g077920.1 423 SVLLKKEPIHELYREMIHDGIAFGAERWLTTLQRMCER 460 ************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.18E-20 | 14 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 19 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.155 | 30 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-18 | 31 | 94 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.56E-19 | 33 | 91 | No hit | No description |
Pfam | PF00046 | 3.1E-17 | 33 | 88 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 65 | 88 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.448 | 227 | 463 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-25 | 228 | 462 | No hit | No description |
CDD | cd08875 | 1.30E-89 | 231 | 459 | No hit | No description |
SMART | SM00234 | 3.2E-28 | 236 | 460 | IPR002913 | START domain |
Pfam | PF01852 | 2.4E-32 | 237 | 460 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.7E-5 | 284 | 415 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.93E-20 | 481 | 717 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MSFVVGVGGS GSGSGGDGGG SQHHDGSETD RKKKRYHRHT AQQIQRLESS FKECPHPDEK 60 QRNQLSRELG LAPRQIKFWF QNRRTQLKAQ HERADNSALK AENDKIRCEN IAIREALKHA 120 ICPNCGGPPV SEDPYFDEQK LRIENAHLRE ELERMSTIAS KYMGRPISQL STLHPMHISP 180 LDLSMTSLTG CGPCGHGPSL DFDLLPGSSM SVSGHNNLQS QPNLAISDMD KPLMTGIALT 240 AMEELLRLLH TNEPLWTKTD GSRDILNLGS YENIFPRSSN RGKNHNFRVE ASRSSGIVFM 300 NAMALVDMFM DCVKCAELFP SIIAASKTLA VISSRMGGTH EGALHLLYEE MEVLSPLVAT 360 REICELRYCQ QIEQGSWVVV NVSYDLPQFV SHSQSFRFPS GCLIQDMPNG YSKVNTSFFL 420 IPSVLLKKEP IHELYREMIH DGIAFGAERW LTTLQRMCER FASLSVPASS SRDLGGVIPS 480 PEGKRSMMRL AQRMISNYCL SVSRSNNTRS TVVSELNEVG VRVTAHKSPE PNGTVLCAAT 540 TFWLPNSPQN VFNFLKDERT RPQWDVLSNG NSVQEVAHIS NGSHPGNCIS VLRASNASQS 600 NNMLILQESS TDSSGALVVY SPVDLSALNI AMSGEDPSYI PLLSSGFAIS PDGNGSTSEQ 660 GGGASTSSGR SSSSNSSGSL ITVGFQIMVS NLPSAKLNME SVETVNNLIG TTVHQIKTAL 720 SGPTASTTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g077920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT003979 | 0.0 | BT003979.1 Arabidopsis thaliana clone RAFL15-10-L20 (R20587) putative homeobox protein (At1g73360) mRNA, complete cds. | |||
GenBank | BT004915 | 0.0 | BT004915.1 Arabidopsis thaliana clone U20587 putative homeobox protein (At1g73360) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428260.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | R0I7H5 | 0.0 | R0I7H5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010428260.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |