PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g075950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28515.7 Da PI: 4.8828 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.7e-20 | 75 | 126 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+G+r+++ +grW+AeIrdp++ r++lg+f tae+Aa+a++ +k+++g+ Csa09g075950.1 75 SRYRGIRRRP-WGRWAAEIRDPTK---GVRVWLGTFNTAEDAARAYDLEAKRIRGA 126 79********.**********964...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.63E-22 | 75 | 134 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.8E-13 | 75 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.33E-32 | 75 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 76 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-37 | 76 | 139 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.263 | 76 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MCGGAVISDY ITPSSEFDQE KIGRGKKSSW TSKAVFDCSI DDFNGDFEEF ESDFSSTRKR 60 ASSGSALDGT KKQSSRYRGI RRRPWGRWAA EIRDPTKGVR VWLGTFNTAE DAARAYDLEA 120 KRIRGAKAKL NFPNEPSKKR IVEAKTVQLI QEKKNHEADI GLAVASSVPS SSHVDFLWDE 180 NNADTLLIDT QWLRDVIMGD AKKKQELNDG EEEGNVNAAL LSEELLAFEN QTECFSQIPF 240 IEGNCDSLTS LSSQSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 77 | 133 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g075950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428119.2 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF073-like | ||||
Swissprot | Q8H0T5 | 2e-98 | ERF73_ARATH; Ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | R0I0A1 | 1e-142 | R0I0A1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010428119.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13737 | 16 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.2 | 1e-102 | ERF family protein |
Publications ? help Back to Top | |||
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