PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g072630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Whirly
Protein Properties Length: 276aa    MW: 30384.7 Da    PI: 9.7779
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g072630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly168.51.6e-52641771114
          Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 
                     +++k+kaal+v++v+ptf+++dsgnl+++r+G+l ++++++++erkyd ++kq f+ls+tev++l++++sk+s+effhdp++k+sn+G+vrk+l+
  Csa09g072630.1  64 AIFKGKAALSVEPVLPTFTEIDSGNLRIERRGSLRMTFMPSIGERKYDGGQKQLFSLSPTEVGSLISMGSKDSSEFFHDPSMKSSNAGQVRKTLS 158
                     59********************************************************************************************* PP

          Whirly  96 vePlpdGsGlfvnlsvtns 114
                     ++P++dGsG+f++ls +++
  Csa09g072630.1 159 IKPHADGSGYFFSLSKDSN 177
                     **************98765 PP
2Whirly24.35.4e-08205234110139
          Whirly 110 svtnslvkgnesfsvPvskaefavlrsllv 139
                      v n+++++n++f+vPv+ aefav++++++
  Csa09g072630.1 205 GVVNNILNTNDRFVVPVTTAEFAVMKTAFS 234
                     578899*********************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.8E-5052178IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.85E-5956170IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.3E-4565177IPR013742Plant transcription factor
PfamPF085361.1E-4200231IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.101.0E-14202251IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544477.85E-59203273IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MMKQARTLLS RSLCDQHKSL LEEKVRATTL RGFASWSDSS PSRGGFSGQK DAAKPSGRVF  60
APYAIFKGKA ALSVEPVLPT FTEIDSGNLR IERRGSLRMT FMPSIGERKY DGGQKQLFSL  120
SPTEVGSLIS MGSKDSSEFF HDPSMKSSNA GQVRKTLSIK PHADGSGYFF SLSKDSNLSI  180
LILLVIWIIS LYPTEIASYE SFLFGVVNNI LNTNDRFVVP VTTAEFAVMK TAFSFALPHI  240
MGWDRVIDQV GTGTQKTTSQ HLTTGPQHIE QEWDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-96502462166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-96502462166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-96502462166Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-96502462166Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g072630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935321e-140AB493532.1 Arabidopsis thaliana At1g71260 mRNA for hypothetical protein, partial cds, clone: RAAt1g71260.
GenBankAY0721101e-140AY072110.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
GenBankAY1229611e-140AY122961.1 Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427952.11e-174PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial-like
SwissprotQ8VYF71e-123WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLR0GIE31e-130R0GIE3_9BRAS; Uncharacterized protein
STRINGXP_010427952.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-125WHIRLY 2