PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g072570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 217aa    MW: 24248.8 Da    PI: 8.2363
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g072570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-1164117255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +  hn+ Er RR r+  ++ +L +llP  s+ ++kK s  +i   A+ YI +Lq
  Csa09g072570.1  64 KLDHNAKERLRRMRLHASYLTLGTLLPDHSSSSKKKWSAPSIIDNAITYIPKLQ 117
                     678*************************87889999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-1353129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1062120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.72262116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.08E-463120No hitNo description
PfamPF000108.2E-864117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-768122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSSQPNHQTS ISSLLHDRLH IPAETIIEKE SAEKDTCQSQ RKRKEPVLHE VDGGSSSGSA  60
AAKKLDHNAK ERLRRMRLHA SYLTLGTLLP DHSSSSKKKW SAPSIIDNAI TYIPKLQNEV  120
GELTLRKDKL VELERRGPSI RAISVLELGE SGYEAVVQIC LKKENEDEFS NLLHVMEVQG  180
LSILSASTSL VCREQRVVCY NFHVKVCLLF IFFISL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g072570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-134AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0169721e-134AC016972.7 Arabidopsis thaliana chromosome 1 BAC F23N20 genomic sequence, complete sequence.
GenBankCP0026841e-134CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085743.11e-148PREDICTED: uncharacterized protein LOC104712692 isoform X1
SwissprotF4I8F91e-128BH160_ARATH; Transcription factor bHLH160
TrEMBLA0A1P8AVK01e-127A0A1P8AVK0_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGXP_010427947.11e-148(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105582234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.11e-124bHLH family protein
Publications ? help Back to Top
  1. Yan J, et al.
    Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.
    Plant Cell, 2017. 29(12): p. 3012-3029
    [PMID:29114014]