PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g071770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 157aa    MW: 18257.4 Da    PI: 7.6054
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g071770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-091001332255
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                      +yp++ ++  LA+++gL+++q+ +WF N+R ++
  Csa09g071770.1 100 WPYPTEGDKIALAEETGLDQKQINNWFINQRKRH 133
                     69*****************************985 PP

2ELK353.1e-125374122
             ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                    +LK+qLlrK++++++sLk EFs
  Csa09g071770.1 53 DLKDQLLRKFGSHISSLKLEFS 74
                    6********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037892.8E-95374IPR005539ELK domain
PROSITE profilePS512139.9355373IPR005539ELK domain
SMARTSM011884.2E-65374IPR005539ELK domain
PROSITE profilePS5007112.69873136IPR001356Homeobox domain
SuperFamilySSF466893.98E-2074146IPR009057Homeodomain-like
SMARTSM003896.6E-1375140IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-2878137IPR009057Homeodomain-like
CDDcd000862.13E-1182137No hitNo description
PfamPF059206.4E-1893132IPR008422Homeobox KN domain
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MLGKRYFRGS LKSLTKVTCV VAQVGSDDGA VSSDEELREA DDDESQQRNN DRDLKDQLLR  60
KFGSHISSLK LEFSKKKKKG KLPREARQAL LDWWNVHYRW PYPTEGDKIA LAEETGLDQK  120
QINNWFINQR KRHWKPSENM PFAMMDDSSD TFFTEE*
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem function, and may be involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g071770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX813531e-136X81353.1 A.thaliana mRNA for ATK1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427829.15e-92PREDICTED: homeobox protein knotted-1-like 2
SwissprotP466403e-78KNAT2_ARATH; Homeobox protein knotted-1-like 2
TrEMBLA0A0D3APM98e-78A0A0D3APM9_BRAOL; Uncharacterized protein
TrEMBLA0A398AAQ32e-77A0A398AAQ3_BRACM; Uncharacterized protein
TrEMBLM4CUM52e-77M4CUM5_BRARP; Uncharacterized protein
STRINGXP_010427829.12e-91(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.13e-72KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang XL,Yang ZP,Zhang J,Zhang LG
    Ectopic expression of BraYAB1-702, a member of YABBY gene family in Chinese cabbage, causes leaf curling, inhibition of development of shoot apical meristem and flowering stage delaying in Arabidopsis thaliana.
    Int J Mol Sci, 2013. 14(7): p. 14872-91
    [PMID:23863694]
  3. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  4. Scofield S,Dewitte W,Murray JA
    STM sustains stem cell function in the Arabidopsis shoot apical meristem and controls KNOX gene expression independently of the transcriptional repressor AS1.
    Plant Signal Behav, 2018.
    [PMID:24776954]
  5. Lee JE,Lampugnani ER,Bacic A,Golz JF
    SEUSS and SEUSS-LIKE 2 coordinate auxin distribution and KNOXI activity during embryogenesis.
    Plant J., 2014. 80(1): p. 122-35
    [PMID:25060324]
  6. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  7. Li Z, et al.
    Transcription factors AS1 and AS2 interact with LHP1 to repress KNOX genes in Arabidopsis.
    J Integr Plant Biol, 2016. 58(12): p. 959-970
    [PMID:27273574]
  8. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]