PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g071250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 325aa    MW: 36369.8 Da    PI: 9.816
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g071250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.93.1e-1426125186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrt.sessstcpy 81 
                     +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++ +    +s +p+
  Csa09g071250.1  26 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSDSNpGSYVSPWPF 120
                     7************************************************997777789********************99998862445789*** PP

        trihelix  82 fdqle 86 
                     f+ l+
  Csa09g071250.1 121 FSALD 125
                     *9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-2424127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMDSVHDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELSRGN LRQKHWQEVA  60
NAVNDRHFNS GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSDSN PGSYVSPWPF  120
FSALDDLLRE SFPTSSTPDS TDNHNPNLRL SLPMAIIPVP VAPRSAIPRR PATSPAIIPH  180
VGDDLLGFRG NLNAFAAAAA AAACPASEDD SEGSRSRSSG GGRSGSNNKK REREIEKKQG  240
YKEVADAIER LGQIYERVEE RKRKEMVELE KQRMRFAKEL ECHRMQLFTE MQVRLHKLRR  300
TSGSKGPTSS AALEYGMMDF PSYF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g071250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180840.0AK118084.1 Arabidopsis thaliana At3g58630 mRNA for unknown protein, complete cds, clone: RAFL19-33-K15.
GenBankBT0055200.0BT005520.1 Arabidopsis thaliana clone U50694 unknown protein (At3g58630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427767.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0FPF30.0R0FPF3_9BRAS; Uncharacterized protein
STRINGXP_010427767.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-157sequence-specific DNA binding transcription factors