PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g070800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 171aa MW: 18782.2 Da PI: 5.0739 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 43.2 | 1.1e-13 | 16 | 60 | 56 | 100 |
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + + ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l+ lk++ Csa09g070800.1 16 ASAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLEILKQQ 60 56779***********************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 7.7E-11 | 17 | 58 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MSSSSSSASS GSPCGASAIT ISYEAQARLQ DPIYGCVSHI FALQQQVVNL QAQLEILKQQ 60 TAQSMIFADS PTSENPNGYY GDTTKTPYHH DHQEPQNIYH HHDQTHLVYQ TGSSGTVHHG 120 DATENSYHNE TSSAMGEFSI YSDLEQRLNT FNQDNLKELQ SANFGYISFS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g070800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473849 | 0.0 | AB473849.1 Arabidopsis thaliana ASL16 mRNA for ASYMMETRIC LEAVES2-like 16 protein, complete cds. | |||
GenBank | AF447893 | 0.0 | AF447893.1 Arabidopsis thaliana LOB DOMAIN 29 (LBD29) mRNA, complete cds. | |||
GenBank | BT025282 | 0.0 | BT025282.1 Arabidopsis thaliana At3g58190 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010427729.1 | 1e-112 | PREDICTED: LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 4e-99 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A178VM67 | 9e-97 | A0A178VM67_ARATH; LBD29 | ||||
STRING | XP_010427729.1 | 1e-112 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-89 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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