PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g070400.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 393aa    MW: 42403.1 Da    PI: 5.9295
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g070400.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.2e-09224271455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Csa09g070400.1 224 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 271
                     8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-8218275No hitNo description
SuperFamilySSF474592.36E-15218289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-15220288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6224271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDLTGGFGAR SGGGGGGGGP YREPIGLESL HLGDEFRQLV TTTTTTLLPP DNAAGSFTAL  60
LELPPTQAVE LLHFTDSSSS SQAAAGIGGG DIIITPSPPP PPLHSFGGGT TLTFPSNSAL  120
MERAARFSVI ATEQQNNNGN NNNNETPTSS VPSNSSDRVK TEPPETDSAM ENQSLCPNQT  180
NRSGKRKDFD KKVKSSTKKN KSSEETEKLP YVHVRARRGQ ATDSHSLAER ARREKINARM  240
KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN  300
GSLMDGSFSG TAMQLAWPHQ AIETEQSFHH RQLQPPPPPP PQQWPFDGLN QPVWGREEDQ  360
THGNDHSNLM AVSENVMVGS ANLHPNQVKM EL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g070400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1397730.0AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBankBT0030370.0BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427669.10.0PREDICTED: transcription factor bHLH60-like
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178V8Y30.0A0A178V8Y3_ARATH; Uncharacterized protein
STRINGXP_010427669.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-171bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]