PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g069400.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 492aa MW: 55305.2 Da PI: 6.113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g069400.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.7	6.7e-16	77	129	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs f+ Lr++lP + +skKls +++++ +YI +Lq Csa09g069400.1 77 KKLNHNASERDRRKKINSLFSSLRSCLPAsD---QSKKLSIPATVTRSLKYIPELQ 129 6789***********************66...*****************998 PP
2	HLH	48.3	1.7e-15	309	361	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++Ns f+ Lr++lP + +skKls e++ + +YI +Lq Csa09g069400.1 309 KKLNHNASERDRRKKLNSLFSSLRSCLPAsD---QSKKLSIPETVSRSLKYIPELQ 361 6789***********************66...*****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.538	76	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.62E-14	77	132	No hit	No description
SuperFamily	SSF47459	3.79E-16	77	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-14	77	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-13	77	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-12	82	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.742	308	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-16	309	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-14	309	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.01E-14	309	365	No hit	No description
Pfam	PF00010	9.3E-13	309	361	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-12	314	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MCALVPPLFP NFGWPSTGEY NSYYLAGDNL NNVGFLDFPV PEETYGAVTA VAHNQTSFGG 60 SVSSEGNEIG NIPVVIKKLN HNASERDRRK KINSLFSSLR SCLPASDQSK KLSIPATVTR 120 SLKYIPELQD QVKKLIKKKE ELMMQVSGQI NIEDYVKPQP KAVASYVSTV SATRLGDNEV 180 MVQISSTKIH NFPISNVLSG LEEDGFVLVD MSSSRSQGER LFYTLHLQVD RIEHYELNCE 240 ELTPSPLFPN FGWPSKYESY YGAGDNLDNG PFLDFPVPQS YGVTHHQNSL GVSVSSEGNE 300 IDNNPVVVKK LNHNASERDR RKKLNSLFSS LRSCLPASDQ SKKLSIPETV SRSLKYIPEL 360 QRQVKKLIQK KEELLERVSG QRDFEHHDQQ QPKAIASYLS TVSATRLGEN EVMVQISSSK 420 THNFSISNVL SGLEEDGFVL VDISSSRSQG ERLFYTLHLQ VEKMDDYYKI NCEELSERML 480 YLYEKYENSQ D*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MCALVPPLFP NFGWPSTGEY NSYYLAGDNL NNVGFLDFPV PEETYGAVTA VAHNQTSFGG  60
SVSSEGNEIG NIPVVIKKLN HNASERDRRK KINSLFSSLR SCLPASDQSK KLSIPATVTR  120
SLKYIPELQD QVKKLIKKKE ELMMQVSGQI NIEDYVKPQP KAVASYVSTV SATRLGDNEV  180
MVQISSTKIH NFPISNVLSG LEEDGFVLVD MSSSRSQGER LFYTLHLQVD RIEHYELNCE  240
ELTPSPLFPN FGWPSKYESY YGAGDNLDNG PFLDFPVPQS YGVTHHQNSL GVSVSSEGNE  300
IDNNPVVVKK LNHNASERDR RKKLNSLFSS LRSCLPASDQ SKKLSIPETV SRSLKYIPEL  360
QRQVKKLIQK KEELLERVSG QRDFEHHDQQ QPKAIASYLS TVSATRLGEN EVMVQISSSK  420
THNFSISNVL SGLEEDGFVL VDISSSRSQG ERLFYTLHLQ VEKMDDYYKI NCEELSERML  480
YLYEKYENSQ D*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g069400.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:12887587, ECO:0000269\|PubMed:17516080}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431420.1	0.0	PREDICTED: transcription factor ORG2-like
Swissprot	Q9M1K1	1e-152	ORG2_ARATH; Transcription factor ORG2
TrEMBL	R0HP72	1e-153	R0HP72_9BRAS; Uncharacterized protein
STRING	XP_010431420.1	1e-180	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-146	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Matsuoka K, et al. Gibberellin-induced expression of Fe uptake-related genes in Arabidopsis. Plant Cell Physiol., 2014. 55(1): p. 87-98 [PMID:24192296] Li X,Zhang H,Ai Q,Liang G,Yu D Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana. Plant Physiol., 2016. 170(4): p. 2478-93 [PMID:26921305] Shen C, et al. Involvement of endogenous salicylic acid in iron-deficiency responses in Arabidopsis. J. Exp. Bot., 2016. 67(14): p. 4179-93 [PMID:27208542] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis. Plant J., 2018. 94(1): p. 157-168 [PMID:29396986] Kurt F,Filiz E Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis. Biometals, 2018. 31(4): p. 489-504 [PMID:29546482]