PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g067350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Dof
Protein Properties Length: 358aa    MW: 38969.6 Da    PI: 8.5641
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g067350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.47.8e-3972131362
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+
  Csa09g067350.1  72 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 131
                     6789*****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3755124IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3274129IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.23675129IPR003851Zinc finger, Dof-type
PROSITE patternPS01361077113IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDFSSLPVNQ FDSHNWQQQG SQHQLDCVTT DQNPSSYLRQ LSSPPASQAG SSQTRVNSMV  60
ERARIAKVPL PEAALNCPRC DSTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV  120
GGGFRRNKRS KSNGGRSKST VLVSADNNTT ASSLTSHPSY SNPSKFLSYG QSTGFTSNLP  180
ILPPLQSLGS DYNSSNNGLD FGGIQISNVI SGMSSSGRIL DPWRIPSSQQ AQQIPFLINT  240
NGMIQSSNAL YPLLEGNEGV NQDDPQQKSS DYSNQLMSKP LMDLASRGDG AEQTRNVKAE  300
ENDQDQGRDG DGLNSLSRNF LGNININSSG NNEYTSWGGN SSWTGFTSNN STGHLSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g067350.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329750.0AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427306.10.0PREDICTED: dof zinc finger protein DOF3.6-like
SwissprotQ9M2U10.0DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLD7LV360.0D7LV36_ARALL; Obf-binding protein 3
STRINGXP_010427306.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.20.0OBF-binding protein 3