PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g067350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Dof | ||||||||
Protein Properties | Length: 358aa MW: 38969.6 Da PI: 8.5641 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.4 | 7.8e-39 | 72 | 131 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+al+cprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+ Csa09g067350.1 72 EAALNCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 131 6789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-37 | 55 | 124 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.1E-32 | 74 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.236 | 75 | 129 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 77 | 113 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MDFSSLPVNQ FDSHNWQQQG SQHQLDCVTT DQNPSSYLRQ LSSPPASQAG SSQTRVNSMV 60 ERARIAKVPL PEAALNCPRC DSTNTKFCYF NNYSLTQPRH FCKTCRRYWT RGGALRNVPV 120 GGGFRRNKRS KSNGGRSKST VLVSADNNTT ASSLTSHPSY SNPSKFLSYG QSTGFTSNLP 180 ILPPLQSLGS DYNSSNNGLD FGGIQISNVI SGMSSSGRIL DPWRIPSSQQ AQQIPFLINT 240 NGMIQSSNAL YPLLEGNEGV NQDDPQQKSS DYSNQLMSKP LMDLASRGDG AEQTRNVKAE 300 ENDQDQGRDG DGLNSLSRNF LGNININSSG NNEYTSWGGN SSWTGFTSNN STGHLSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g067350.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL132975 | 0.0 | AL132975.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010427306.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.6-like | ||||
Swissprot | Q9M2U1 | 0.0 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | D7LV36 | 0.0 | D7LV36_ARALL; Obf-binding protein 3 | ||||
STRING | XP_010427306.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.2 | 0.0 | OBF-binding protein 3 |