PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g062510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 187aa MW: 21338.2 Da PI: 4.5643 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52 | 1.3e-16 | 6 | 85 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 v+p +f++ + + t +l+ ++gr W+v++ +k ++++++t GW++F+++++L +g+f++F +++ ++++ v+vf++ Csa09g062510.1 6 QVIPLSFIKLLADP--FPNTAKLQGTRGRDWTVNM--TKIRDGVYFTVGWSKFAQDHELVDGEFLTFDRVRWYNRTFEVSVFDR 85 58999999666655..8889***************..*******************************8855777789999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.915 | 1 | 86 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.2E-6 | 3 | 86 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-17 | 4 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.08E-16 | 5 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.3E-14 | 6 | 85 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.47E-14 | 7 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MCLDHQVIPL SFIKLLADPF PNTAKLQGTR GRDWTVNMTK IRDGVYFTVG WSKFAQDHEL 60 VDGEFLTFDR VRWYNRTFEV SVFDRLSCKE TIVEAETIEL SGSSSDSEAE EDEEPSMDVD 120 YDLSLGNVDI KALTNPHFPT TLKKRIYELL IPGNVLKEND LKFGKTVKYI DEEGTLVGLR 180 MKLNMF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g062510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010413388.1 | 2e-77 | PREDICTED: B3 domain-containing protein REM20-like isoform X3 | ||||
Swissprot | Q8LAV5 | 1e-56 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | R0HPM7 | 2e-71 | R0HPM7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010431339.1 | 1e-105 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 9e-51 | B3 family protein |
Publications ? help Back to Top | |||
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