PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g062230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 414aa    MW: 46281.1 Da    PI: 10.0548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g062230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-08328377147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r ++T  E e lv+av+ lG+g+W+ I ++     ++Rt  ++k++w ++
   Csa09g062230.1 328 RRPFTVSEVEALVQAVETLGTGRWRDIKSHAFdhaNHRTYVDLKDKWKTL 377
                      679***************************999**9***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd017690.00422196261No hitNo description
PROSITE profilePS5129415.811323382IPR017930Myb domain
SuperFamilySSF466892.47E-16325412IPR009057Homeodomain-like
SMARTSM007175.0E-9327380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-11328378IPR009057Homeodomain-like
PfamPF002493.5E-6328377IPR001005SANT/Myb domain
CDDcd116603.31E-17329379No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGRTEELVQS VRGRVLGLKL KKTVGFDAYQ LPVVPRAYRS PRGRRLKPMR KHRFEFEVLT  60
QVAGELSGEC KNAIGSLAHE TNETKDDDVV VNNLLETMEV EVKPQPDLEK PSSKVLLSKD  120
WLALGPSMSS SPITEEKNFD SSSKIDGKRK MCNMKERGSC SSQESQDMYP LKKRKLFYQN  180
HRPDTHEAPC TVKFGIKSLK ISELLVDIPE SATVGSLKLA VLEAVTRILK DGLNIGVLLR  240
GKTIDDDSKT LLQIGIAQDD DHNLISSLGF MLEPHKSETT SGTTLTTVYP ATRRLRVRGP  300
VDSTEAVAAK PARMKPASQP EMVQRRIRRP FTVSEVEALV QAVETLGTGR WRDIKSHAFD  360
HANHRTYVDL KDKWKTLVHT AKISARQRRG EPVPQDLLDR VLAAHAFWSD RTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-4832141310102Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g062230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026861e-83CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085588.10.0PREDICTED: telomere repeat-binding protein 6-like
SwissprotQ9M3470.0TRP6_ARATH; Telomere repeat-binding protein 6
TrEMBLA0A178VMQ20.0A0A178VMQ2_ARATH; TRFL4
STRINGXP_010431335.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15921911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53790.10.0TRF-like 4