PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g061960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 95aa    MW: 10464.8 Da    PI: 8.6997
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g061960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.52.6e-111857443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    + k +r+v  skRr++++ KA  L+ L +a++av + s  
  Csa09g061960.1 18 DTKQQRSVACSKRRQTLFSKAADLCLLSGANIAVFVTSLA 57
                    56899******************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006612.755755IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-16766IPR002100Transcription factor, MADS-box
CDDcd002662.80E-20875No hitNo description
SuperFamilySSF554553.92E-14877IPR002100Transcription factor, MADS-box
PfamPF003197.4E-102055IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MMMKRGGTKR KIEIKKRDTK QQRSVACSKR RQTLFSKAAD LCLLSGANIA VFVTSLAENF  60
DVVYSFSGYS PASEIADYDR GSYDENEEAS EGLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g061960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431328.14e-49PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0H9P91e-37R0H9P9_9BRAS; Uncharacterized protein
STRINGXP_010431328.11e-48(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48150.11e-38M-type_MADS family protein